Finishing up Final Project from Andrew Verdegaal #9
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…; background added for project
…netic relationships)
…a uniformed file mix to use for initial phylogenetic analysis/ genome comparison
…ine; added notes on work and images produced thus far
… this analysis, including individual graphs of dissimilar accessory regions; added more notes
…to find alternative methods to align Salmonella genomes and then construct a phylogenetic tree through FastTree or Phylip
…wnstream programs to use; this project may turn into comparing alignment/ phylogenetic methods for bacterial whole genome study
…otes about today and some papers
…lysis pipeline; Added a couple papers and notes for today and yesterday
…ids used as references in analysis
…pine, agent, and Clustage pipeline; modified and added notes that were missing
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Hey Casey
I believe everything here is in order now! Thank you so much for an amazing learning experience in the class.
Also, if you want the citations done differently, please let me know, I will gladly fix it if need be.