Yale-EEB723 · aaverdegaal · Feb 14, 2019 · Feb 19, 2019 · Feb 19, 2019 · Feb 19, 2019
diff --git a/190425_Verdegaal_EEB723_project.pptx b/190425_Verdegaal_EEB723_project.pptx
diff --git a/...a enterica subsp enterica Serotype Typhimurium Sequence Type 313, Isolated from India.pdf b/...a enterica subsp enterica Serotype Typhimurium Sequence Type 313, Isolated from India.pdf
diff --git a/...e Sequence of the Host-Restricted Salmonella enterica Serovar Abortusovis Strain SS44.pdf b/...e Sequence of the Host-Restricted Salmonella enterica Serovar Abortusovis Strain SS44.pdf
diff --git a/ClustAGE_Project_papers/Integrative and Conjugative Elements Review.pdf b/ClustAGE_Project_papers/Integrative and Conjugative Elements Review.pdf
diff --git a/...ject_papers/Salmonella bongori Provides Insights into the Evolution of the Salmonelae.pdf b/...ject_papers/Salmonella bongori Provides Insights into the Evolution of the Salmonelae.pdf
diff --git a/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.accessory.fasta b/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.accessory.fasta
diff --git a/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.accessory_coords.txt b/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.accessory_coords.txt
diff --git a/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.accessory_loci.txt b/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.accessory_loci.txt
diff --git a/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.statistics.txt b/Data/190416_AGEnt_results/SR44/S_Abortusovis_SR44_AGEnt.statistics.txt
@@ -0,0 +1,5 @@
+AGEnt.pl version 0.3.1
+inputs -m 85 -s 10
+
+source	total_bp	gc_%	num_segs	min_seg	max_seg	avg_leng	median_leng	num_cds
+accessory	1193097	48.98	627	10	23791	1902.87	579	1279
diff --git a/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.accessory.fasta b/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.accessory.fasta
diff --git a/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.accessory_coords.txt b/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.accessory_coords.txt
diff --git a/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.accessory_loci.txt b/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.accessory_loci.txt
diff --git a/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.statistics.txt b/Data/190416_AGEnt_results/ST313/S_Typhimurium_ST313_AGEnt.statistics.txt
@@ -0,0 +1,5 @@
+AGEnt.pl version 0.3.1
+inputs -m 85 -s 10
+
+source	total_bp	gc_%	num_segs	min_seg	max_seg	avg_leng	median_leng	num_cds
+accessory	1555377	49.34	993	10	22854	1566.34	638	1485
diff --git a/Data/190416_Rast_Annotation/ST313/90371.3124.faa b/Data/190416_Rast_Annotation/ST313/90371.3124.faa
diff --git a/Data/190416_Rast_Annotation/ST313/90371.3124.fna b/Data/190416_Rast_Annotation/ST313/90371.3124.fna
diff --git a/Data/190416_Rast_Annotation/ST313/90371.3124.xls b/Data/190416_Rast_Annotation/ST313/90371.3124.xls
diff --git a/Data/190416_Rast_Annotation/ST313/S_Typhimurium_ST313.gbk b/Data/190416_Rast_Annotation/ST313/S_Typhimurium_ST313.gbk
diff --git a/Data/190416_Spine_results/salmonella_clustage.backbone.fasta b/Data/190416_Spine_results/salmonella_clustage.backbone.fasta
diff --git a/Data/190416_Spine_results/salmonella_clustage.backbone_coords.txt b/Data/190416_Spine_results/salmonella_clustage.backbone_coords.txt
diff --git a/Data/190416_Spine_results/salmonella_clustage.backbone_loci.txt b/Data/190416_Spine_results/salmonella_clustage.backbone_loci.txt
diff --git a/Data/190416_Spine_results/salmonella_clustage.coords.txt b/Data/190416_Spine_results/salmonella_clustage.coords.txt