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In preparing I found a paper directly looking at applications and limitations of TopHat and Cufflinks that I'm glancing over just to get a sense of how it works. I thought it might be useful to add.
In preparing I found a paper directly looking at applications and limitations of TopHat and Cufflinks that I'm glancing over just to get a sense of how it works. I thought it might be useful to add.
https://www.nature.com/articles/nprot.2012.016
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