You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi there!
I am running VISION using Seurat object and it was working fine before but I am now encountering error:
sig <- c("gene_sets/GO_ALPHA_BETA_T_CELL_ACTIVATION.gmt")
vis <- Vision(Seurat_obj, dimRed ="umap", signatures = sig, projection_methods = NULL)
vis <- analyze(vis)
|=======================================================================================| 100%, Elapsed 00:00
|=======================================================================================| 100%, Elapsed 00:00
sigSize sigBalance
1 43 1
|=======================================================================================| 100%, Elapsed 00:00
|=======================================================================================| 100%, Elapsed 00:16
|=======================================================================================| 100%, Elapsed 01:56
|======================== | 26%, ETA 00:01
Warning: all scheduled cores encountered errors in user codeError in x$consistency : $ operator is invalid for atomic vectors
I believe this might because of the input Seurat object but I compared the ones that worked and the ones don't work and I could not find out what is causing the error. Would it be possible that you could point me to the right direction in how to fix the input or anything that would fix this issue?
Thanks!!
The text was updated successfully, but these errors were encountered:
Hi there!
I am running VISION using Seurat object and it was working fine before but I am now encountering error:
I believe this might because of the input Seurat object but I compared the ones that worked and the ones don't work and I could not find out what is causing the error. Would it be possible that you could point me to the right direction in how to fix the input or anything that would fix this issue?
Thanks!!
The text was updated successfully, but these errors were encountered: