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Textbook Lacks Important Details #287

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DarioS opened this issue Aug 20, 2024 · 0 comments
Open

Textbook Lacks Important Details #287

DarioS opened this issue Aug 20, 2024 · 0 comments

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@DarioS
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DarioS commented Aug 20, 2024

Section 15.9: Ridgeline Plot for Expression Distribution of GSEA Result has little information. Plot's x-axis has no title. What are the units? Should discuss advantages and disadvantages of changing core_enrichment from TRUE to FALSE.

Similarly, simplify is introduced in Section 17.4.3: Reduce Redundancy of Enriched GO Terms

measure: Method to measure similarity.

But what are valid options? Should be like measure = c("m1", "m2", "m3") and in function measure <- match.arg(measure). Also, there is no explanation of what "Wang" means mathematically. Refernces section links to old GitHub issues.

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