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Update README.md
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a-sfrank authored Oct 24, 2022
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Expand Up @@ -67,7 +67,7 @@ The code implementation is based on the following articles:
|File names:| Description:|
|---|---|
|Input.m:| Change and adapt input parameters for pcca+ and TPT analsyis in Input.m file; Define the filepath to folder where the results of analysis shall be saved. |
|TPTCases.m:| **For Bistability:** To vary flow/transition direction adapt start and end set in the file. For Case 1 (lines 37/38), for case 2 (lines 72/73), for case 3 (lines 109/110), for case 4 (lines 146/147). *Note:* Start set is A; End set is B; Set C is the complement to the sets A and B in the state space. Set A or B represent one of the four macrophage phenotypes (LL, LH, HL or HH). **For Tristability:** NO ADAPTATIONS NEEDED. The variation in flow directions is accounted for in the various subcases.|
|TPTCases.m:| **For Bistability:** To vary flow/transition direction adapt start and end set in the file. For Case 1 (lines 35/36), for case 2 (lines 71/72), for case 3 (lines 107/108), for case 4 (lines 143/144). *Note:* Start set is A; End set is B; Set C is the complement to the sets A and B in the state space. Set A or B represent one of the four macrophage phenotypes (LL, LH, HL or HH). **For Tristability:** NO ADAPTATIONS NEEDED. The variation in flow directions is accounted for in the various subcases.|

# Code outputs:
#### 1. From PCCA+ analysis
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