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This repository has been archived by the owner on Oct 18, 2024. It is now read-only.

Releases: a-slide/pycoQC

2.1alpha2

15 Jan 17:23
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2.1alpha2 Pre-release
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Implement manual Summary sequencing file generation

pycoQC 2.0 alpha6

13 Nov 23:15
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pycoQC 2.0 alpha6 Pre-release
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This release contains a first prototype of command line interface generating a beautiful HTML report (for people who don't like Jupyter).

In addition we fixed the default behaviour of pycoQC to generate empty plots that then needed to be activated by clicking on one of the button.

pycoQC 2.0 alpha5

08 Nov 11:06
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pycoQC 2.0 alpha5 Pre-release
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This new version is a major disruptive package update not retro compatible with previous released versions.
The last stable v1 version is archived in a separate stalled branch that will not be maintained any more (https://github.com/a-slide/pycoQC/tree/v1).

This major update includes the following:

  • Slight performance improvement
  • Transition from matplolib/seaborn to plotly to generate beautiful interactive plots
  • Changes in plots in response to the issues raised in pycoQC 1 (issues closed now)
  • pipy packaging
  • Usage is now available in an interactive online jupyter notebook + static HTML version
  • Multiple Sequencing summary files can now be provided
  • Add barcode support
  • Use logging module + custom exception

Basically it is a 90% rewriting of the entire package

Relase final version of legacy version v1

18 Oct 17:10
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No changes, except updating of installation instructions for v1 legacy version

v1.1.alpha2

08 May 16:20
3effdba
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v1.1.alpha2 Pre-release
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Add barcode plotting functionality

v1.1.alpha2

14 Dec 20:44
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v1.1.alpha2 Pre-release
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Just add DOI for automatic archiving and citations

v1.1.alpha1

14 Dec 20:36
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v1.1.alpha1 Pre-release
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Re-factoring, update to extract more info from Albacore 2.0+ and add extra options for plots

v1.0.alpha

03 Jul 15:22
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v1.0.alpha Pre-release
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First alpha release, including documentation and tests

v1.0.dev3

28 Jun 14:46
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Minor improvements and additional capabilities

v1.0.dev2

22 Jun 18:06
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Add new function

  • reads_len_quality

Update tests and readme