Mansonella-Genomes-Sinha-et-al.-2023

Description of pipelines and scripts used for assembling genomes of Mansonella perstans and Mansonella ozzardi.
The assembled genomes are other results are described in the following paper:
- Sinha A, Li Z, Poole CB, Morgan RD, Ettwiller L, Lima NF, et al. Genomes of the human filarial parasites Mansonella perstans and Mansonella ozzardi. Frontiers in Tropical Diseases. 2023;4. doi:10.3389/fitd.2023.1139343
Full workflow details available at README.mansonella_pipeline.md

Name		Name	Last commit message	Last commit date
Latest commit History 32 Commits
Acanthocheilonema_viteae_braker2		Acanthocheilonema_viteae_braker2
Mansonella_genomes		Mansonella_genomes
gene_predictions_on_Lefoulon2020_genomes		gene_predictions_on_Lefoulon2020_genomes
LICENSE		LICENSE
README.mansonella_pipeline.md		README.mansonella_pipeline.md
README.md		README.md
getN50.r		getN50.r
getSequenceStats_by_Taxa.r		getSequenceStats_by_Taxa.r
job-canu-pacbio.sh		job-canu-pacbio.sh
job-finisherSC.sh		job-finisherSC.sh
job-polca.sh		job-polca.sh
job-redundans.sh		job-redundans.sh
job00.preprocess-NextSeq-reads.sh		job00.preprocess-NextSeq-reads.sh
job01.metaspades.sh		job01.metaspades.sh
job02.reads-to-assembly.sh		job02.reads-to-assembly.sh
job03.blastn-assembly.sh		job03.blastn-assembly.sh
job04.diamond-assembly.sh		job04.diamond-assembly.sh
job05.create-blobplot.sh		job05.create-blobplot.sh
job06.R.blobplot-analysis.R		job06.R.blobplot-analysis.R
job07.redundans.sh		job07.redundans.sh
mansonella_pipeline.md		mansonella_pipeline.md
r.setup-blob-colors.R		r.setup-blob-colors.R

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