Fixes by format action (#106) #216

	name: Code Coverage

	on:
	push:
	paths:
	- "skscope/*.py"
	- "src/**"
	- "pytest/*.py"
	- ".github/workflows/code_coverage.yml"
	pull_request:
	paths:
	- "skscope/*.py"
	- "src/**"
	- "pytest/*.py"
	- ".github/workflows/code_coverage.yml"
	workflow_dispatch:

	jobs:
	codecovPy:
	name: Codecov workflow
	runs-on: ubuntu-latest
	env:
	PYTHON: "3.9"
	steps:
	- uses: actions/checkout@master
	- name: Setup Python
	uses: actions/setup-python@master
	with:
	python-version: 3.9
	- name: Checkout repository and submodules
	uses: actions/checkout@v3
	with:
	submodules: recursive
	- name: Install skscope & dependencies
	run: \|
	export PROFILE=1
	pip install .
	ls * -al
	- name: Generate coverage report
	run: \|
	pip install pytest
	pip install pytest-cov
	pip install gcovr
	pip install pandas
	cd ./pytest
	pytest --cov=skscope -v --cov-report=xml
	ls * -al
	cd ..
	gcovr --filter src/ --exclude-throw-branches --exclude-unreachable-branches --print-summary --xml cpp_coverage.xml
	ls * -al
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	files: ./pytest/coverage.xml, ./cpp_coverage.xml
	verbose: true

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