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abikesa committed Jul 4, 2024
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67 changes: 50 additions & 17 deletions _sources/part2/part2.ipynb
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"cell_type": "markdown",
"metadata": {},
"source": [
"Sure, let's make it more engaging and detailed. Here's a clinical summary of the patient based on the given scenario vector:\n",
"\n",
"```{figure} https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Nietzsche_paul-ree_lou-von-salome188.jpg/220px-Nietzsche_paul-ree_lou-von-salome188.jpg\n",
"---\n",
"width: 100%\n",
"name: banner-welcome\n",
"alt: Two people, a woman and a man, waving next to a banner that says - welcome.\n",
"---\n",
"*Power dynamics :)*\n",
"```\n",
"### Clinical Notes:\n",
"\n",
"This risk personalization is for a 60-year-old woman, given the centering age of 60 years.\n",
"\n",
"- **Diabetes:** She does not have diabetes.\n",
"- **Insulin Usage:** She does not use insulin.\n",
"- **Diabetes Pill Usage:** She takes diabetes pills.\n",
"- **Hypertension:** She has hypertension.\n",
"- **High Blood Pressure Medication:** She is on medication for high blood pressure.\n",
"- **Smoking Status:** She does not smoke.\n",
"- **Income Level:** She belongs to the reference income group, which indicates a baseline category for income.\n",
"- **Gender:** Female.\n",
"- **Race:** She is of Mexican American descent.\n",
"- **Health Status:** Her health status is reported as excellent.\n",
"- **Education Level:** She has a K-8 education level.\n",
"- **Body Mass Index (BMI):** Centered around the population mean.\n",
"- **Estimated Glomerular Filtration Rate (eGFR):** Centered around the population mean.\n",
"- **Urine Albumin-to-Creatinine Ratio (UACR):** Centered around the population mean.\n",
"- **Glucose-6-Phosphate Dehydrogenase (G6PD) Levels:** Centered around the population mean.\n",
"\n",
"### Additional Details:\n",
"\n",
"- **Refused to answer other questions** related to income levels beyond the reference category.\n",
"- **Age-Centered Adjustments:** The patient’s specific clinical metrics (BMI, eGFR, UACR) are centered around the average values for a 60-year-old, indicating adjustments have been made to personalize risk based on age-related norms.\n",
" \n",
"### Clinical Implications:\n",
"\n",
"This patient profile suggests a middle-aged woman who is generally in good health, well-managed in terms of her hypertension and diabetes, and has a background of modest education and income. The personalized risk assessment aims to provide a more accurate prediction based on her specific demographic and clinical characteristics.\n",
"\n",
"This summary should help understand the risk profile for this individual and guide personalized clinical decisions.\n",
"\n",
"<iframe src=\"https://abikesa.github.io/music/_downloads/270ce1dc688a64dec497dfe81d0966aa/mozart.pdf\" width=\"100%\" height=\"1000\" style=\"borders:none\"></iframe>\n",
"<iframe src=\"https://abikesa.github.io/music/_downloads/a207eb5446aa5d171a0ba97791498e49/bach.pdf\" width=\"100%\" height=\"1000\" style=\"borders:none\"></iframe>\n",
"<iframe src=\"https://abikesa.github.io/music/_downloads/f1747777a15dcc72b5adef6cfcae8d8e/handel.pdf\" width=\"100%\" height=\"1000\" style=\"borders:none\"></iframe>\n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"To set up a tidy workflow for updating your app whenever you receive new sets of CSV files, you can follow these steps:\n",
"\n",
"1. **Organize your file structure**: Ensure your project has a clear structure for data, scripts, and deployment.\n",
Expand Down Expand Up @@ -531,6 +545,25 @@
"\n",
"This workflow ensures that your app is always updated with the latest data and deployed automatically."
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"\n",
"```{figure} https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Nietzsche_paul-ree_lou-von-salome188.jpg/220px-Nietzsche_paul-ree_lou-von-salome188.jpg\n",
"---\n",
"width: 100%\n",
"name: banner-welcome\n",
"alt: Two people, a woman and a man, waving next to a banner that says - welcome.\n",
"---\n",
"*Power dynamics :)*\n",
"```\n",
"\n",
"<iframe src=\"https://abikesa.github.io/music/_downloads/270ce1dc688a64dec497dfe81d0966aa/mozart.pdf\" width=\"100%\" height=\"1000\" style=\"borders:none\"></iframe>\n",
"<iframe src=\"https://abikesa.github.io/music/_downloads/a207eb5446aa5d171a0ba97791498e49/bach.pdf\" width=\"100%\" height=\"1000\" style=\"borders:none\"></iframe>\n",
"<iframe src=\"https://abikesa.github.io/music/_downloads/f1747777a15dcc72b5adef6cfcae8d8e/handel.pdf\" width=\"100%\" height=\"1000\" style=\"borders:none\"></iframe>\n"
]
}
],
"metadata": {
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58 changes: 49 additions & 9 deletions part2/part2.html
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Expand Up @@ -485,6 +485,9 @@ <h2> Contents </h2>
</li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#beta-coefficients">Beta Coefficients</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#scenario-vector">Scenario Vector</a><ul class="nav section-nav flex-column">
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#clinical-notes">Clinical Notes:</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#additional-details">Additional Details:</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#clinical-implications">Clinical Implications:</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#directory-structure">Directory Structure</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#step-by-step-workflow">Step-by-Step Workflow</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#usage">Usage</a></li>
Expand Down Expand Up @@ -788,22 +791,47 @@ <h2>Scenario Vector<a class="headerlink" href="#scenario-vector" title="Permalin
<img alt="../_images/49b2781b3037b76730a489571b32f6cf260f4507d10a486239113c27263c7edd.png" src="../_images/49b2781b3037b76730a489571b32f6cf260f4507d10a486239113c27263c7edd.png" />
</div>
</div>
<figure class="align-default" id="banner-welcome">
<a class="reference internal image-reference" href="https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Nietzsche_paul-ree_lou-von-salome188.jpg/220px-Nietzsche_paul-ree_lou-von-salome188.jpg"><img alt="Two people, a woman and a man, waving next to a banner that says - welcome." src="https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Nietzsche_paul-ree_lou-von-salome188.jpg/220px-Nietzsche_paul-ree_lou-von-salome188.jpg" style="width: 100%;" /></a>
<figcaption>
<p><span class="caption-number">Fig. 1 </span><span class="caption-text"><em>Power dynamics :)</em></span><a class="headerlink" href="#banner-welcome" title="Permalink to this image">#</a></p>
</figcaption>
</figure>
<iframe src="https://abikesa.github.io/music/_downloads/270ce1dc688a64dec497dfe81d0966aa/mozart.pdf" width="100%" height="1000" style="borders:none"></iframe>
<iframe src="https://abikesa.github.io/music/_downloads/a207eb5446aa5d171a0ba97791498e49/bach.pdf" width="100%" height="1000" style="borders:none"></iframe>
<iframe src="https://abikesa.github.io/music/_downloads/f1747777a15dcc72b5adef6cfcae8d8e/handel.pdf" width="100%" height="1000" style="borders:none"></iframe>
<p>Sure, let’s make it more engaging and detailed. Here’s a clinical summary of the patient based on the given scenario vector:</p>
<section id="clinical-notes">
<h3>Clinical Notes:<a class="headerlink" href="#clinical-notes" title="Permalink to this heading">#</a></h3>
<p>This risk personalization is for a 60-year-old woman, given the centering age of 60 years.</p>
<ul class="simple">
<li><p><strong>Diabetes:</strong> She does not have diabetes.</p></li>
<li><p><strong>Insulin Usage:</strong> She does not use insulin.</p></li>
<li><p><strong>Diabetes Pill Usage:</strong> She takes diabetes pills.</p></li>
<li><p><strong>Hypertension:</strong> She has hypertension.</p></li>
<li><p><strong>High Blood Pressure Medication:</strong> She is on medication for high blood pressure.</p></li>
<li><p><strong>Smoking Status:</strong> She does not smoke.</p></li>
<li><p><strong>Income Level:</strong> She belongs to the reference income group, which indicates a baseline category for income.</p></li>
<li><p><strong>Gender:</strong> Female.</p></li>
<li><p><strong>Race:</strong> She is of Mexican American descent.</p></li>
<li><p><strong>Health Status:</strong> Her health status is reported as excellent.</p></li>
<li><p><strong>Education Level:</strong> She has a K-8 education level.</p></li>
<li><p><strong>Body Mass Index (BMI):</strong> Centered around the population mean.</p></li>
<li><p><strong>Estimated Glomerular Filtration Rate (eGFR):</strong> Centered around the population mean.</p></li>
<li><p><strong>Urine Albumin-to-Creatinine Ratio (UACR):</strong> Centered around the population mean.</p></li>
<li><p><strong>Glucose-6-Phosphate Dehydrogenase (G6PD) Levels:</strong> Centered around the population mean.</p></li>
</ul>
</section>
<section id="additional-details">
<h3>Additional Details:<a class="headerlink" href="#additional-details" title="Permalink to this heading">#</a></h3>
<ul class="simple">
<li><p><strong>Refused to answer other questions</strong> related to income levels beyond the reference category.</p></li>
<li><p><strong>Age-Centered Adjustments:</strong> The patient’s specific clinical metrics (BMI, eGFR, UACR) are centered around the average values for a 60-year-old, indicating adjustments have been made to personalize risk based on age-related norms.</p></li>
</ul>
</section>
<section id="clinical-implications">
<h3>Clinical Implications:<a class="headerlink" href="#clinical-implications" title="Permalink to this heading">#</a></h3>
<p>This patient profile suggests a middle-aged woman who is generally in good health, well-managed in terms of her hypertension and diabetes, and has a background of modest education and income. The personalized risk assessment aims to provide a more accurate prediction based on her specific demographic and clinical characteristics.</p>
<p>This summary should help understand the risk profile for this individual and guide personalized clinical decisions.</p>
<p>To set up a tidy workflow for updating your app whenever you receive new sets of CSV files, you can follow these steps:</p>
<ol class="arabic simple">
<li><p><strong>Organize your file structure</strong>: Ensure your project has a clear structure for data, scripts, and deployment.</p></li>
<li><p><strong>Create a script to automate the update process</strong>: Write a script that will read the new CSV files, process the data, and update your app.</p></li>
<li><p><strong>Use a version control system (Git)</strong>: Track changes and manage updates using Git.</p></li>
<li><p><strong>Deploy the updated app</strong>: Automate the deployment process using tools like GitHub Pages or a CI/CD pipeline.</p></li>
</ol>
</section>
<section id="directory-structure">
<h3>Directory Structure<a class="headerlink" href="#directory-structure" title="Permalink to this heading">#</a></h3>
<p>Ensure your directory structure looks like this:</p>
Expand Down Expand Up @@ -961,6 +989,15 @@ <h3>Usage<a class="headerlink" href="#usage" title="Permalink to this heading">#
</pre></div>
</div>
<p>This workflow ensures that your app is always updated with the latest data and deployed automatically.</p>
<figure class="align-default" id="banner-welcome">
<a class="reference internal image-reference" href="https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Nietzsche_paul-ree_lou-von-salome188.jpg/220px-Nietzsche_paul-ree_lou-von-salome188.jpg"><img alt="Two people, a woman and a man, waving next to a banner that says - welcome." src="https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Nietzsche_paul-ree_lou-von-salome188.jpg/220px-Nietzsche_paul-ree_lou-von-salome188.jpg" style="width: 100%;" /></a>
<figcaption>
<p><span class="caption-number">Fig. 1 </span><span class="caption-text"><em>Power dynamics :)</em></span><a class="headerlink" href="#banner-welcome" title="Permalink to this image">#</a></p>
</figcaption>
</figure>
<iframe src="https://abikesa.github.io/music/_downloads/270ce1dc688a64dec497dfe81d0966aa/mozart.pdf" width="100%" height="1000" style="borders:none"></iframe>
<iframe src="https://abikesa.github.io/music/_downloads/a207eb5446aa5d171a0ba97791498e49/bach.pdf" width="100%" height="1000" style="borders:none"></iframe>
<iframe src="https://abikesa.github.io/music/_downloads/f1747777a15dcc72b5adef6cfcae8d8e/handel.pdf" width="100%" height="1000" style="borders:none"></iframe>
</section>
</section>
<div class="toctree-wrapper compound">
Expand Down Expand Up @@ -1037,6 +1074,9 @@ <h3>Usage<a class="headerlink" href="#usage" title="Permalink to this heading">#
</li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#beta-coefficients">Beta Coefficients</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#scenario-vector">Scenario Vector</a><ul class="nav section-nav flex-column">
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#clinical-notes">Clinical Notes:</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#additional-details">Additional Details:</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#clinical-implications">Clinical Implications:</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#directory-structure">Directory Structure</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#step-by-step-workflow">Step-by-Step Workflow</a></li>
<li class="toc-h3 nav-item toc-entry"><a class="reference internal nav-link" href="#usage">Usage</a></li>
Expand Down
2 changes: 1 addition & 1 deletion searchindex.js
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