Replies: 2 comments
-
Yes, you have to. It's not integrated. No installation needed to run, but you need to meet requirements mentioned in assembler/src/plasmid_utils/README.md (prodigal, hmmsearch, Pfam-A database) |
Beta Was this translation helpful? Give feedback.
-
Thanks a lot Dmitry for quick reply!
Thanks very much in advance! Best, ======= SPAdes pipeline finished WITH WARNINGS! === Error correction and assembling warnings:
|
Beta Was this translation helpful? Give feedback.
-
Hi there,
Thanks for your effort on the amazing tools of SPAdes!
I have installed metaplasmidSPAdes from source code. Wondering whether I need to run plasmidverify.py after running metaplasmidspades.py? has the plasmidverify.py been integrated into metaplasmidspades.py?
It seems I need to install plasmidverify.py independently following assembler/src/plasmid_utils/README.md? Could you help clarify?
Thanks a lot in advance!
Best,
Liguan
Beta Was this translation helpful? Give feedback.
All reactions