Merge pull request #336 from natacha-beck/release_2.5.4

Release 2.5.4

build/brainbrowser-2.5.4/workers/deindex.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a,c,d,e){a=a||[],c=c||[],d=d||[],e=e;var f,g,h,i,j,k,l,m,n,o,p=a.length,q=3*p,r=4*p,s=d.length>0,t={},u={};4===e.length&&(j=!0,f=e[0],g=e[1],h=e[2],i=e[3]);var v=new Float32Array(q),w=s?new Float32Array(q):null,x=new Float32Array(r);for(k=0,l=a.length;l>k;k++)b(t,c[3*a[k]],c[3*a[k]+1],c[3*a[k]+2]);for(u.x=t.min_x+(t.max_x-t.min_x)/2,u.y=t.min_y+(t.max_y-t.min_y)/2,u.z=t.min_z+(t.max_z-t.min_z)/2,k=0;p>k;k+=3)m=3*k,n=4*k,v[m]=c[3*a[k]],v[m+1]=c[3*a[k]+1],v[m+2]=c[3*a[k]+2],v[m+3]=c[3*a[k+1]],v[m+4]=c[3*a[k+1]+1],v[m+5]=c[3*a[k+1]+2],v[m+6]=c[3*a[k+2]],v[m+7]=c[3*a[k+2]+1],v[m+8]=c[3*a[k+2]+2],s&&(w[m]=d[3*a[k]],w[m+1]=d[3*a[k]+1],w[m+2]=d[3*a[k]+2],w[m+3]=d[3*a[k+1]],w[m+4]=d[3*a[k+1]+1],w[m+5]=d[3*a[k+1]+2],w[m+6]=d[3*a[k+2]],w[m+7]=d[3*a[k+2]+1],w[m+8]=d[3*a[k+2]+2]),j?(x[n]=f,x[n+1]=g,x[n+2]=h,x[n+3]=i,x[n+4]=f,x[n+5]=g,x[n+6]=h,x[n+7]=i,x[n+8]=f,x[n+9]=g,x[n+10]=h,x[n+11]=i):(x[n]=e[4*a[k]],x[n+1]=e[4*a[k]+1],x[n+2]=e[4*a[k]+2],x[n+3]=e[4*a[k]+3],x[n+4]=e[4*a[k+1]],x[n+5]=e[4*a[k+1]+1],x[n+6]=e[4*a[k+1]+2],x[n+7]=e[4*a[k+1]+3],x[n+8]=e[4*a[k+2]],x[n+9]=e[4*a[k+2]+1],x[n+10]=e[4*a[k+2]+2],x[n+11]=e[4*a[k+2]+3]);return o={centroid:u,bounding_box:t,unindexed:{position:v,normal:w,color:x}}}function b(a,b,c,d){(!a.min_x||a.min_x>b)&&(a.min_x=b),(!a.max_x||a.max_x<b)&&(a.max_x=b),(!a.min_y||a.min_y>c)&&(a.min_y=c),(!a.max_y||a.max_y<c)&&(a.max_y=c),(!a.min_z||a.min_z>d)&&(a.min_z=d),(!a.max_z||a.max_z<d)&&(a.max_z=d)}self.addEventListener("message",function(b){var c,d,e,f,g=b.data,h=g.shapes,i=g.vertices,j=g.normals,k=g.colors,l=[i.buffer];for(c=0,d=h.length;d>c;c++)e=h[c],f=a(e.indices,i,j,e.color||k),e.centroid=f.centroid,e.unindexed=f.unindexed,l.push(e.indices.buffer),l.push(e.unindexed.position.buffer),e.unindexed.normal&&l.push(e.unindexed.normal.buffer),e.unindexed.color&&l.push(e.unindexed.color.buffer);j&&l.push(j.buffer),k&&l.push(k.buffer),g.deindexed=!0,self.postMessage(g,l)})}();

build/brainbrowser-2.5.4/workers/freesurferasc.intensity.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a){var b,c,d,e,f,g,h;for(a=a.trim(),c=a.split("\n"),f=c.length,b=new Float32Array(f),d=parseFloat(c[0].trim().split(/\s+/)[4]),b[0]=d,g=d,h=d,e=1;f>e;e++)d=parseFloat(c[e].trim().split(/\s+/)[4]),b[e]=d,g=Math.min(g,d),h=Math.max(h,d);return{values:new Float32Array(b),min:g,max:h}}self.addEventListener("message",function(b){var c=a(b.data.data);self.postMessage(c,[c.values.buffer])})}();

build/brainbrowser-2.5.4/workers/freesurferasc.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a){var b,c,d,e,f,g,h,i,j={};for(a=a.split("\n"),d=a[1].trim().split(/\s+/),e=parseInt(d[0],10),f=parseInt(d[1],10),b=new Float32Array(3*e),c=new Uint32Array(3*f),h=0;e>h;h++)g=a[h+2].trim().split(/\s+/),i=3*h,b[i]=parseFloat(g[0]),b[i+1]=parseFloat(g[1]),b[i+2]=parseFloat(g[2]);for(h=0;f>h;h++)g=a[h+e+2].trim().split(/\s+/),i=3*h,c[i]=parseInt(g[0],10),c[i+1]=parseInt(g[1],10),c[i+2]=parseInt(g[2],10);return j.type="polygon",j.vertices=b,j.shapes=[{indices:c}],j}self.addEventListener("message",function(b){var c=a(b.data.data),d=[c.vertices.buffer,c.shapes[0].indices.buffer];self.postMessage(c,d)})}();

build/brainbrowser-2.5.4/workers/freesurferbin.intensity.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a){var c,d,e,f,g,h,i=new DataView(a),j=0,k=b(i);if(j+=3,16777215!==k)return{error:!0,error_message:"Unrecognized file format."};if(d=i.getUint32(j),j+=8,e=i.getUint32(j),j+=4,1!==e)return{error:!0,error_message:"Only one value per vertex supported. Number of values: "+e};for(c=new Float32Array(d),c[0]=f=g=i.getFloat32(j),j+=4,h=1;d>h;h++)c[h]=i.getFloat32(j),f=Math.min(f,c[h]),g=Math.max(g,c[h]),j+=4;return{values:c,min:f,max:g}}function b(a){var b,c=0;for(b=0;3>b;b++)c+=a.getUint8(b)<<8*(3-b-1);return c}self.addEventListener("message",function(b){var c=a(b.data.data);self.postMessage(c,[c.values.buffer])})}();

build/brainbrowser-2.5.4/workers/freesurferbin.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a){var c,d,e,f,g,h,i=new DataView(a),j=0,k=b(i);if(j+=3,16777214!==k)return{error:!0,error_message:"Only triangle meshes supported."};for(;10!==i.getUint8(j)||10!==i.getUint8(j+1);)j++;for(j+=2,d=i.getUint32(j),j+=4,f=3*i.getUint32(j),j+=4,c=new Float32Array(3*d),e=new Uint32Array(f),g=0;d>g;g++)h=3*g,c[h]=i.getFloat32(j),j+=4,c[h+1]=i.getFloat32(j),j+=4,c[h+2]=i.getFloat32(j),j+=4;for(g=0;f>g;g++)e[g]=i.getUint32(j),j+=4;return{vertices:c,shapes:[{indices:e}]}}function b(a){var b,c=0;for(b=0;3>b;b++)c+=a.getUint8(b)<<8*(3-b-1);return c}self.addEventListener("message",function(b){var c=a(b.data.data),d=[c.vertices.buffer,c.shapes[0].indices.buffer];self.postMessage(c,d)})}();

build/brainbrowser-2.5.4/workers/gifti.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a){var b={},c=gifti.parse(a),d=c.getNumPoints(),e=c.getNumTriangles();if(e>0&&d>0)b.type="polygon",b.vertices=c.getPointsDataArray().getData(),b.shapes=[{indices:c.getTrianglesDataArray().getData()}];else if(c.dataArrays.length>0){var f,g,h,i=c.dataArrays[0].getData(),j=i.length;for(f=+Number.MAX_VALUE,g=-Number.MAX_VALUE,h=0;j>h;h++)f=Math.min(f,i[h]),g=Math.max(g,i[h]);b.values=i,b.min=f,b.max=g;var k="";Object.keys(c.labelTable).forEach(function(a){var b=c.labelTable[a];k+=b.key+" ",k+=b.r+" ",k+=b.g+" ",k+=b.b+" ",k+=b.a+"\n"}),k.length>0&&(b.colors=k)}return b}self.addEventListener("message",function(b){var c=b.data;importScripts(c.url+"gifti-reader.js");var d=a(c.data)||{error:!0,error_message:"Error parsing data."},e=[];d.vertices&&d.shapes[0].indices?(e.push(d.vertices.buffer,d.shapes[0].indices.buffer),self.postMessage(d,e)):(e.push(d.values.buffer),self.postMessage(d,e))})}();

build/brainbrowser-2.5.4/workers/json.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a){var e={name:a.name,type:a.type,shapes:[]},f=[];return e.vertices=new Float32Array(b(a.vertices)),f.push(e.vertices.buffer),a.colors=a.colors||a.color,a.colors&&(e.colors=b(a.colors),e.vertices.length===e.colors.length||3===e.colors.length?e.colors=c(e.colors):e.colors=new Float32Array(e.colors),f.push(e.colors.buffer)),a.normals&&(e.normals=new Float32Array(b(a.normals)),f.push(e.normals.buffer)),void 0===a.shapes&&(a.shapes=[]),a.indices&&a.shapes.push({indices:a.indices}),a.shapes.forEach(function(a){var c=new Uint32Array(b(a.indices));a.one_indexed&&d(c),f.push(c.buffer),a.color=a.color||a.colors,Array.isArray(a.color)&&3===a.color.length&&a.color.push(1),a.color&&(a.color=new Float32Array(a.color),f.push(a.color.buffer)),e.shapes.push({name:a.name,indices:c,color:a.color})}),{result:e,transfer:f}}function b(a,c){if(!Array.isArray(a))return[a];if(c=c||0,c===a.length)return[];var d,e,f=[];for(d=0,e=a.length;e>d;d++)f.push.apply(f,b(a[d]));return f}function c(a){var b,c,d,e;for(b=new Float32Array(4*a.length/3),c=d=0,e=a.length;e>c;)b[d++]=a[c++],b[d++]=a[c++],b[d++]=a[c++],b[d++]=1;return b}function d(a){var b,c;for(b=0,c=a.length;c>b;b++)a[b]=a[b]-1}self.addEventListener("message",function(b){var c=a(JSON.parse(b.data.data)),d=c.result,e=c.transfer;self.postMessage(d,e)})}();

build/brainbrowser-2.5.4/workers/text.intensity.worker.js

@@ -0,0 +1,32 @@
+/*
+* BrainBrowser: Web-based Neurological Visualization Tools
+* (https://brainbrowser.cbrain.mcgill.ca)
+*
+* Copyright (C) 2011
+* The Royal Institution for the Advancement of Learning
+* McGill University
+*
+* This program is free software: you can redistribute it and/or modify
+* it under the terms of the GNU Affero General Public License as
+* published by the Free Software Foundation, either version 3 of the
+* License, or (at your option) any later version.
+*
+* This program is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+* GNU Affero General Public License for more details.
+*
+* You should have received a copy of the GNU Affero General Public License
+* along with this program.  If not, see <http://www.gnu.org/licenses/>.
+*/
+
+/*
+* BrainBrowser v2.5.4
+*
+* Author: Tarek Sherif  <tsherif@gmail.com> (http://tareksherif.ca/)
+* Author: Nicolas Kassis
+* Author: Paul Mougel
+*
+* three.js (c) 2010-2014 three.js authors, used under the MIT license
+*/
+!function(){"use strict";function a(a){var b,c,d,e,f={};for(f.values=new Float32Array(a.trim().split(/\s+/).map(parseFloat)),d=f.values[0],e=f.values[0],b=1,c=f.values.length;c>b;b++)d=Math.min(d,f.values[b]),e=Math.max(e,f.values[b]);return f.min=d,f.max=e,f}self.addEventListener("message",function(b){var c=a(b.data.data);self.postMessage(c,[c.values.buffer])})}();