remove mark

aehrc · Apr 4, 2024 · 3ed3b78 · 3ed3b78
1 parent da88fa9
commit 3ed3b78
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/src/main/java/au/csiro/variantspark/utils/FileUtils.java b/src/main/java/au/csiro/variantspark/utils/FileUtils.java
@@ -20,9 +20,9 @@ public static boolean isBGZFile(String filePath) {
 		 * .vcf is not GZP file and get htsjdk.samtools.SAMFormatException: at header from java.io.BufferedReader.readLine(BufferedReader.java:389)
 		*/
 	    try (BufferedInputStream bufferedInputStream = new BufferedInputStream(new FileInputStream(filePath))) {
-	        bufferedInputStream.mark(100); // mark the current position
+	        //bufferedInputStream.mark(100); // mark the current position
 	        boolean isValid = BlockCompressedInputStream.isValidFile(bufferedInputStream);
-	        bufferedInputStream.reset(); // reset back to the marked position
+	        //bufferedInputStream.reset(); // reset back to the marked position
 	        return isValid;
 	    } catch (IOException e) {
 	        // Handle the exception