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Change TimeCollection constructor to protected #3733

Change TimeCollection constructor to protected

Change TimeCollection constructor to protected #3733

Triggered via push July 1, 2024 01:35
Status Failure
Total duration 40m 16s
Artifacts 10

test.yml

on: push
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69 errors and 29 warnings
FHIR server (tranche 3)
Credentials could not be loaded, please check your action inputs: Could not load credentials from any providers
LightweightFhirEncodersTest.testThrowsExceptionWhenUnsupportedResource: encoders/src/test/java/au/csiro/pathling/encoders/LightweightFhirEncodersTest.java#L168
Expected au.csiro.pathling.encoders.UnsupportedResourceError to be thrown, but nothing was thrown.
Encoders
There were 1 failed tests
Python API
Process completed with exit code 1.
Docker image
There were 1 failed tests
CapabilityStatementTest.capabilityStatement: fhir-server/src/test/java/au/csiro/pathling/test/integration/CapabilityStatementTest.java#L50
rest[mode=server].operation[definition=https://pathling.csiro.au/fhir/OperationDefinition/import-6] Expected: a JSON object but none found ; rest[mode=server].operation[definition=https://pathling.csiro.au/fhir/OperationDefinition/result-6] Expected: a JSON object but none found ; rest[mode=server].operation[definition=https://pathling.csiro.au/fhir/OperationDefinition/job-6] Expected: a JSON object but none found ; rest[mode=server].operation[definition=https://pathling.csiro.au/fhir/OperationDefinition/result-7] Unexpected: a JSON object ; rest[mode=server].operation[definition=https://pathling.csiro.au/fhir/OperationDefinition/job-7] Unexpected: a JSON object ; rest[mode=server].operation[definition=https://pathling.csiro.au/fhir/OperationDefinition/import-7] Unexpected: a JSON object ; rest[mode=server].resource[]: Expected 141 values but got 142 ; url Expected: https://pathling.csiro.au/fhir/CapabilityStatement/pathling-fhir-api-6 got: https://pathling.csiro.au/fhir/CapabilityStatement/pathling-fhir-api-7
FHIR server (tranche 2)
There were 9 failed tests
ExtractQueryTest.whereInMultipleColumns: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L315
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.multipleIndependentUnnestings: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L367
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.linkedUnnesting: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L349
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.literalColumn: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L185
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.combineWithUnequalCardinalities: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L502
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.multipleNonSingularColumnsWithDifferentTypes: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L331
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.combineResultInSecondFilter: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L299
[INTERNAL_ERROR] The Spark SQL phase analysis failed with an internal error. You hit a bug in Spark or the Spark plugins you use. Please, report this bug to the corresponding communities or vendors, and provide the full stack trace.
ExtractQueryTest.limit: fhir-server/src/test/java/au/csiro/pathling/extract/ExtractQueryTest.java#L270
expected: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]> but was: <[[9360820c-8602-4335-8b50-c88d627a0c20,female]:1, [7001ad9c-34d2-4eb5-8165-5fdc2147f469,female]:1, [e62e52ae-2d75-4070-a0ae-3cc78d35ed08,female]:1, [121503c8-9564-4b48-9086-a22df717948e,female]:1]>
FHIR server (tranche 1)
There were 61 failed tests
R API
Test failures
R API
Process completed with exit code 1.
FHIR server (tranche 3)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: aws-actions/configure-aws-credentials@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FHIR server (tranche 3)
The following actions uses node12 which is deprecated and will be forced to run on node16: aws-actions/configure-aws-credentials@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
JavaScript client
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/setup-node@v3, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
JavaScript client
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Import lambda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/setup-node@v3, actions/cache@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Import lambda
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Encoders
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/cache@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Encoders
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Encoders
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
Python API
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/cache@v3, actions/setup-python@v4. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Python API
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Docker image
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/cache@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Docker image
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Docker image
Unexpected input(s) 'security-checks', valid inputs are ['entryPoint', 'args', 'scan-type', 'image-ref', 'input', 'scan-ref', 'exit-code', 'ignore-unfixed', 'vuln-type', 'severity', 'format', 'template', 'output', 'skip-dirs', 'skip-files', 'cache-dir', 'timeout', 'ignore-policy', 'hide-progress', 'list-all-pkgs', 'scanners', 'trivyignores', 'artifact-type', 'github-pat', 'trivy-config', 'tf-vars', 'limit-severities-for-sarif', 'docker-host']
Benchmark
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: aws-actions/configure-aws-credentials@v1, actions/checkout@v3, actions/setup-java@v2, actions/cache@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Benchmark
The following actions uses node12 which is deprecated and will be forced to run on node16: aws-actions/configure-aws-credentials@v1, actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Benchmark
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
Benchmark
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
FHIR server (tranche 2)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/cache@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FHIR server (tranche 2)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
FHIR server (tranche 2)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
FHIR server (tranche 1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/cache@v3, actions/upload-artifact@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
FHIR server (tranche 1)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
FHIR server (tranche 1)
No files were found with the provided path: **/*.dump **/*.dumpstream. No artifacts will be uploaded.
R API
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, actions/cache@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
R API
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Deprecation notice: v1, v2, and v3 of the artifact actions
The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "benchmark-results", "encoders-coverage", "encoders-surefire-reports", "fhir-server-1-coverage", "fhir-server-1-surefire-reports", "fhir-server-1-timing-log", "fhir-server-2-coverage", "fhir-server-2-surefire-reports", "fhir-server-2-timing-log", "import-lambda". Please update your workflow to use v4 of the artifact actions. Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
Site
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/setup-java@v2, azure/setup-helm@v3, actions/setup-node@v3, actions/cache@v3, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
Site
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
benchmark-results Expired
14.8 KB
encoders-coverage Expired
448 KB
encoders-surefire-reports Expired
454 KB
fhir-server-1-coverage Expired
1.31 MB
fhir-server-1-surefire-reports Expired
1.72 MB
fhir-server-1-timing-log Expired
5.42 KB
fhir-server-2-coverage Expired
1.31 MB
fhir-server-2-surefire-reports Expired
1.56 MB
fhir-server-2-timing-log Expired
80 Bytes
import-lambda Expired
20.9 MB