Discussions

• 1 You must be logged in to vote

  🙏

  How to optimize image of eGRN?

  Countyard asked Nov 14, 2024 in Q&A · Unanswered

  

  

  2
• 1 You must be logged in to vote

  🙏

  Is there a way to find out which enhancer regions associated with the TFs that were kept in the final results?

  YaoLi3 asked Nov 14, 2024 in Q&A · Answered

  

  

  2
• 2 You must be logged in to vote

  🙏

  Is it possible to run SCENIC+ with only scATAC data (without scRNA)?

  Ziyan-Lin asked May 31, 2023 in Q&A · Unanswered

  

  

  

  

  8
• 1 You must be logged in to vote

  🙏

  Understanding scenicPlus settings and Outputs

  orian116 asked Sep 18, 2024 in Q&A · Unanswered

  

  

  

  

  5
• 3 You must be logged in to vote

  🙏

  why would a known TF and it's motif not show up in our results?

  sid5427 asked Jul 14, 2023 in Q&A · Unanswered

  

  

  

  

  3
• 1 You must be logged in to vote

  🙏

  Motif enrichment analysis in promoter and non-promoter regions

  bj-chen asked Nov 5, 2024 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  How do I generate heatmap-dotplot presented in SCENIC+ paper

  kennethho04 asked Oct 29, 2024 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  💬

  Creating scenicplus_obj

  Umaarasu started Mar 7, 2023 in General

  

  

  

  

  6
• 1 You must be logged in to vote

  🙏

  How do I interpret tutorial heatmap-dotplot?

  kennethho04 asked Oct 29, 2024 in Q&A · Answered

  

  

  1
• 1 You must be logged in to vote

  🙏

  coverageplot does not show gene body, exon, etc

  question Further information is requested

  mervedede asked Aug 14, 2023 in Q&A · Unanswered

  

  

  

  

  7
• 5 You must be logged in to vote

  💬

  Metacell and scenic plus

  alexwang1001 started Apr 19, 2023 in General

  

  

  

  

  2
• 1 You must be logged in to vote

  🙏

  Comparing SCENIC+ GRN Inference Across Developmental Stages Using Evaluation Metrics

  OjongTabi asked Sep 25, 2024 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  How to perform motif scanning using other methods based on the SCENIC+ motif database?

  Larrycpan asked Sep 25, 2024 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  Is it possible to use SCENIC+ to infer GRNs using scRNA data and scATAC data with only h5ad and bw data (i.e. no fragment data)?

  WhenMelancholy asked Sep 19, 2024 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  How is MotifSimilarity column in motifAnnotations_mgi generated ?

  jiangpuxuan asked Sep 10, 2024 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Merging of direct and extended eGRN

  r-trimbour asked Sep 4, 2024 in Q&A · Unanswered

  

  

  1
• 2 You must be logged in to vote

  💬

  Ideas on how to best visualize GRNs

  AmosFong1 started Sep 8, 2024 in General

  

  

  0
• 3 You must be logged in to vote

  🙏

  Converting mudata output to old-style SCENIC+ object: issues with create_nx_tables for visualization of nerworks

  laurajohanne asked Apr 29, 2024 in Q&A · Unanswered

  

  

  

  

  2
• 1 You must be logged in to vote

  🙏

  Length mismatch: Expected axis has 0 elements, new values have 3 elements

  Sudheshna30 asked Jan 17, 2024 in Q&A · Unanswered

  

  

  

  

  9
• 1 You must be logged in to vote

  🙏

  "run_cgs_models" runs for a long time without output

  WangRong423 asked Feb 8, 2023 in Q&A · Unanswered

  

  

  

  

  6
• 1 You must be logged in to vote

  🙏

  generating celltype specific TF to gene table

  sid5427 asked Mar 14, 2023 in Q&A · Answered

  

  

  

  

  6
• 2 You must be logged in to vote

  🙏

  Repressors in the heatmap dotplot

  LukasOussoren asked Aug 6, 2024 in Q&A · Unanswered

  

  

  1
• 3 You must be logged in to vote

  🙏

  eRegulon difference between two groups in specific cell type

  ianhsu99 asked Mar 6, 2023 in Q&A · Unanswered

  

  

  

  

  11
• 1 You must be logged in to vote

  💬

  Advanced Downstream Analysis with new mudata object

  cedmo001 started May 23, 2024 in General

  

  

  

  

  5
• 1 You must be logged in to vote

  🙏

  eRSS vs cell-type specific regulons

  paupaiz asked Aug 6, 2024 in Q&A · Unanswered

  

  

  0