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Hi all, I was running pycistarget in the 10 multiome pbmc tutorial and the output shows the program was unable to load annotation for homo sapiens. Thank you for your help in advance!
The code block I run was:
2024-03-12 09:32:40,726 pycisTarget_wrapper INFO pbmc_tutorial/motifs folder already exists.
2024-03-12 09:32:41,077 pycisTarget_wrapper INFO Loading cisTarget database for topics_otsu
2024-03-12 09:32:41,078 cisTarget INFO Reading cisTarget database
2024-03-12 09:33:43,362 pycisTarget_wrapper INFO Running cisTarget for topics_otsu
2024-03-12 09:33:46,295 INFO worker.py:1715 -- Started a local Ray instance. View the dashboard at http://127.0.0.1:8265/
(ctx_internal_ray pid=511733) 2024-03-12 09:33:48,555 cisTarget INFO Running cisTarget for Topic1 which has 8490 regions
(ctx_internal_ray pid=511715) 2024-03-12 09:33:53,633 cisTarget INFO Running cisTarget for Topic16 which has 6896 regions [repeated 15x across cluster] (Ray deduplicates logs by default. Set RAY_DEDUP_LOGS=0 to disable log deduplication, or see https://docs.ray.io/en/master/ray-observability/ray-logging.html#log-deduplication for more options.)
(ctx_internal_ray pid=511725) 2024-03-12 09:34:07,468 cisTarget INFO Annotating motifs for Topic2
(ctx_internal_ray pid=511725) 2024-03-12 09:34:07,474 cisTarget INFO Unable to load annotation for homo_sapiens
(ctx_internal_ray pid=511725) 2024-03-12 09:34:07,908 cisTarget INFO Getting cistromes for Topic2
(ctx_internal_ray pid=511720) 2024-03-12 09:34:12,565 cisTarget INFO Annotating motifs for Topic13 [repeated 13x across cluster]
(ctx_internal_ray pid=511720) 2024-03-12 09:34:12,567 cisTarget INFO Unable to load annotation for homo_sapiens [repeated 13x across cluster]
(ctx_internal_ray pid=511720) 2024-03-12 09:34:13,436 cisTarget INFO Getting cistromes for Topic13 [repeated 13x across cluster]
(ctx_internal_ray pid=511722) 2024-03-12 09:34:13,937 cisTarget INFO Annotating motifs for Topic15 [repeated 2x across cluster]
(ctx_internal_ray pid=511722) 2024-03-12 09:34:13,940 cisTarget INFO Unable to load annotation for homo_sapiens [repeated 2x across cluster] # !!!!! warning here
(ctx_internal_ray pid=511722) 2024-03-12 09:34:14,422 cisTarget INFO Getting cistromes for Topic15 [repeated 2x across cluster]
2024-03-12 09:34:18,391 cisTarget INFO Done!
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Hi all, I was running pycistarget in the 10 multiome pbmc tutorial and the output shows the program was unable to load annotation for homo sapiens. Thank you for your help in advance!
The code block I run was:
and I have got these outputs:
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