Skip to content

Commit

Permalink
added new model configs including vast ages
Browse files Browse the repository at this point in the history
  • Loading branch information
@jimianelli
jimianelli committed Oct 19, 2023
1 parent 696a177 commit 9985ae1
Show file tree
Hide file tree
Showing 34 changed files with 898 additions and 9,075 deletions.
Binary file removed 2023_runs/.README.md.swo
View file
Binary file not shown.
2 changes: 1 addition & 1 deletion 2023_runs/addatsage/pm.dat
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
Updated_2022_ats_age
../dat/pm_23.2.dat
../dat/pm_23.3.dat
../dat/selvar23.dat
control.dat
../dat/pm_fmsy_alt.dat
Expand Down
Binary file removed 2023_runs/addavo23/pm
View file
Binary file not shown.
1 change: 1 addition & 0 deletions 2023_runs/addavo23/pm
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
../../src/pm
2 changes: 1 addition & 1 deletion 2023_runs/addavo23/pm.dat
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
Updated_2023_avo_value
../dat/pm_23.1.dat
../dat/pm_23.2.dat
../dat/selvar23.dat
control.dat
../dat/pm_fmsy_alt.dat
Expand Down
6,648 changes: 0 additions & 6,648 deletions 2023_runs/addavo23/pm.tpl
View file

This file was deleted.

1 change: 1 addition & 0 deletions 2023_runs/addavo23/pm.tpl
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
../../src/pm.tpl
Binary file removed 2023_runs/addavo23/spm
View file
Binary file not shown.
1 change: 1 addition & 0 deletions 2023_runs/addavo23/spm
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
/Users/jim/_mymods/afsc-assessments/spmR/src/spm
2 changes: 1 addition & 1 deletion 2023_runs/addbtsind/pm.dat
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
Updated_2022_catage
../dat/pm_23.4.dat
../dat/pm_23.5.dat
../dat/selvar23.dat
control.dat
../dat/pm_fmsy_alt.dat
Expand Down
2 changes: 1 addition & 1 deletion 2023_runs/addcatage/pm.dat
View file
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
Updated_2022_catage
../dat/pm_23.3.dat
../dat/pm_23.4.dat
../dat/selvar23.dat
control.dat
../dat/pm_fmsy_alt.dat
Expand Down
82 changes: 41 additions & 41 deletions 2023_runs/dat/cov_2023.dat
View file

Large diffs are not rendered by default.

Binary file modified 2023_runs/dat/data_2023.xlsx
View file
Binary file not shown.
438 changes: 0 additions & 438 deletions 2023_runs/dat/pm_23.1.dat
View file

This file was deleted.

1 change: 1 addition & 0 deletions 2023_runs/dat/pm_23.1.dat
View file
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
pm_sep23.dat
5 changes: 3 additions & 2 deletions 2023_runs/dat/pm_23.2.dat
View file
Original file line number Diff line number Diff line change
Expand Up @@ -156,7 +156,8 @@
#ob_avo
1.741476103 2.00191307 0.991543151 0.6951 1.9218 1.703822566 1.5206 2.177629578 3.0769 3.5927 2.8319 2.263 2.0841 2.8292 2.4101 2.9031 2.481
#ob_avo_std
0.315209957 0.706482242 0.128833535 0.623835773 0.926238051 0.338407104 0.594798955 0.376901038 0.927921386 0.649681346 0.606240029 0.507564608 0.407729402 1.016115227 0.847454978 0.72727856 0.536285914
#0.315209957 0.706482242 0.128833535 0.623835773 0.926238051 0.338407104 0.594798955 0.376901038 0.927921386 0.649681346 0.606240029 0.507564608 0.407729402 1.016115227 0.847454978 0.72727856 0.536285914
0.2246665 0.50354657 0.091826349 0.444640141 0.660177944 0.241200311 0.423944094 0.268636936 0.661377744 0.463061623 0.432098741 0.361767646 0.290609912 0.724238073 0.604025158 0.518369186 0.382238812
#wt_avo
0.019380752 0.101459822 0.244144755 0.378145671 0.526992229 0.652066615 0.763603851 0.846668019 0.933519833 0.971437494 1.001150919 1.149534691 1.211687201 1.281049807 1.179917849
0.018495649 0.087193364 0.279247415 0.437187833 0.582488803 0.686632399 0.788236316 0.870999726 0.970100191 1.102708516 1.105671451 1.236948448 1.235486845 1.749460306 1.230626606
Expand Down Expand Up @@ -370,7 +371,7 @@
173.7523144 1037.867561 4496.058693 4476.397474 715.4651492 348.0987511 392.1956995 420.2866809 95.66705009 30.74347277 17.98265111 5.843507784 3.552001306 2.24751704 3.46612378
449.9560697 516.6093561 248.6421369 621.1817528 2267.541471 944.1034531 198.3784801 111.7534614 107.3072124 74.91088882 19.72410485 5.506480253 2.853834098 0 1.379630275
350 1180 4550 4440 1190 490 560 650 130 60 30 10 10 0 10
141.5599371 332.3180686 975.2239558 6577.728336 819.4224892 211.0354178 132.9748998 239.1224362 166.2507231 33.85915214 16.72626114 17.89777641 6.576771132 2.139021371 1.566526045
142.7915945 235.6691782 1089.532036 5937.968694 1311.237029 275.1332992 210.6777137 216.1994556 168.2534874 46.33339344 16.2791573 12.96489729 7.787445613 3.574390655 0
#ob_ats
3629 2945 3591 4141 3626 4306 4010 1873 2278 1406 1325 2642 2296 4730 4829 2499 3605.1 3834
#ob_ats_std
Expand Down
12 changes: 6 additions & 6 deletions 2023_runs/dat/pm_23.3.dat
View file
Original file line number Diff line number Diff line change
Expand Up @@ -156,7 +156,8 @@
#ob_avo
1.741476103 2.00191307 0.991543151 0.6951 1.9218 1.703822566 1.5206 2.177629578 3.0769 3.5927 2.8319 2.263 2.0841 2.8292 2.4101 2.9031 2.481
#ob_avo_std
0.315209957 0.706482242 0.128833535 0.623835773 0.926238051 0.338407104 0.594798955 0.376901038 0.927921386 0.649681346 0.606240029 0.507564608 0.407729402 1.016115227 0.847454978 0.72727856 0.536285914
0.2246665 0.50354657 0.091826349 0.444640141 0.660177944 0.241200311 0.423944094 0.268636936 0.661377744 0.463061623 0.432098741 0.361767646 0.290609912 0.724238073 0.604025158 0.518369186 0.382238812
#0.315209957 0.706482242 0.128833535 0.623835773 0.926238051 0.338407104 0.594798955 0.376901038 0.927921386 0.649681346 0.606240029 0.507564608 0.407729402 1.016115227 0.847454978 0.72727856 0.536285914
#wt_avo
0.019380752 0.101459822 0.244144755 0.378145671 0.526992229 0.652066615 0.763603851 0.846668019 0.933519833 0.971437494 1.001150919 1.149534691 1.211687201 1.281049807 1.179917849
0.018495649 0.087193364 0.279247415 0.437187833 0.582488803 0.686632399 0.788236316 0.870999726 0.970100191 1.102708516 1.105671451 1.236948448 1.235486845 1.749460306 1.230626606
Expand All @@ -180,25 +181,25 @@
#minind
1 1 1
#n_fsh
59
58
#n_bts
40
#n_ats
18
#yrs_fsh_data
1964 1965 1966 1967 1968 1969 1970 1971 1972 1973 1974 1975 1976 1977 1978 1979 1980 1981 1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022
1964 1965 1966 1967 1968 1969 1970 1971 1972 1973 1974 1975 1976 1977 1978 1979 1980 1981 1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 #2022
#yrs_bts_data
1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2021 2022
#yrs_ats_data
1994 1996 1997 1999 2000 2002 2004 2006 2007 2008 2009 2010 2012 2014 2016 2018 2020 2022
#sam_fsh
10 10 10 10 10 10 10 10 10 10 10 10 10 10 39 39 39 39 39 39 39 39 39 39 39 39 39 259.3788487 227.2361746 343.2236586 285.3401641 256.0352721 188.4095209 317.5476673 353.3089942 474.4475646 480.7231453 327.00581 484.8374742 439.3496508 389.1322193 492.6284859 504.4149593 498.4412839 521.7925027 418.5401923 547.4567257 725.4914921 605.304496 750.599324 604.1931166 818.3217844 701.6125895 604.5679443 665.471896 698.3100371 563.238271 814.6780065 638.960727726109
10 10 10 10 10 10 10 10 10 10 10 10 10 10 39 39 39 39 39 39 39 39 39 39 39 39 39 259.3788487 227.2361746 343.2236586 285.3401641 256.0352721 188.4095209 317.5476673 353.3089942 474.4475646 480.7231453 327.00581 484.8374742 439.3496508 389.1322193 492.6284859 504.4149593 498.4412839 521.7925027 418.5401923 547.4567257 725.4914921 605.304496 750.599324 604.1931166 818.3217844 701.6125895 604.5679443 665.471896 698.3100371 563.238271 814.6780065 #638.960727726109
#sam_bts
105 126 118 125 88 105 76 80 82 71 82 90 74 75 90 78 82 90 101 107 110 107 108 109 102 97 82 87 90 113 116 120 137 151 115 105 100 100 100 100
#sam_ats
43 32 49 67 70 72 51 47 39 35 26 34 44 79 61 50 1 25
#err_fsh
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#err_bts
1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
#err_ats
Expand Down Expand Up @@ -262,7 +263,6 @@
693.624977 10887.45269 12297.51336 18344.93186 157441.768 915850.174 422035.3 93086.9308 52090.31 52936.3305 10048.64867 2904.074808 842.067706 0 0
3728.872608 245895.183 85609.4214 99166.5509 134148.4254 548488.018 598282.245 126607.5752 53007.3379 37834.4061 27031.31923 6894.141202 1734.760787 1168.156312 0
0 111342.1894 1295656.83 144027.0587 109954.8589 107116.4918 309318.572 295756.434 72064.7779 26519.3242 16136.35852 8500.63187 2049.838765 0 420.166248
0.01 64577.11 174731.01 1037390.01 182123.01 70819.51 80117.41 139143.01 80714.51 16663.51 13435.91 4746.88 6774.16 1007.36 0.01
#ob_bts
3820.955415 8980.690093 6472.573036 7558.523915 7157.572859 7833.207662 11680.45377 9975.776513 11408.40767 7235.169043 6643.105366 7822.558111 6886.639043 6554.920526 3990.580771 4458.646423 3454.712224 5592.794625 7052.538949 6014.134676 6720.68835 11175.83254 5632.534028 6882.763183 4113.099646 6867.444708 4275.984953 2851.964316 5174.023496 4540.972719 5173.001355 6658.368526 11692.74865 10654.0134 8427.36746 8914.543873 4039.306754 9443.668508 4807.966746 6508.732518
#ob_bts_std
Expand Down
Loading

0 comments on commit 9985ae1

Please sign in to comment.