From 71833c20c82e35fe3ec2c87cc55dd1b7a7d3d51c Mon Sep 17 00:00:00 2001
From: Maia Kapur <39382798+mkapur-noaa@users.noreply.github.com>
Date: Mon, 16 Dec 2024 12:11:30 -0800
Subject: [PATCH] rename cpp to growthbreaks

---
 NAMESPACE                                     |   4 +--
 man/growthbreaks-package.Rd                   |  26 ++++++++++++++++++
 ...{sptlVB_Sel_Sigma.cpp => growthbreaks.cpp} |   0
 src/growthbreaks.dll                          | Bin 95534 -> 95534 bytes
 4 files changed, 28 insertions(+), 2 deletions(-)
 create mode 100644 man/growthbreaks-package.Rd
 rename src/TMB/{sptlVB_Sel_Sigma.cpp => growthbreaks.cpp} (100%)

diff --git a/NAMESPACE b/NAMESPACE
index 5bf6d8f..3c2ac12 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -7,5 +7,5 @@ export(confint_Deriv)
 export(get_Breaks)
 export(refit_Growth)
 import(mgcv)
-exportPattern("^[[:alpha:]]+")
-useDynLib(src, .registration=TRUE); useDynLib(src_TMBExports)
\ No newline at end of file
+useDynLib(growthbreaks, .registration=TRUE); useDynLib(growthbreaks_TMBExports)
+useDynLib(src, .registration=TRUE); useDynLib(src_TMBExports)
diff --git a/man/growthbreaks-package.Rd b/man/growthbreaks-package.Rd
new file mode 100644
index 0000000..438e6ea
--- /dev/null
+++ b/man/growthbreaks-package.Rd
@@ -0,0 +1,26 @@
+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/growthbreaks-package.R, R/src-package.R
+\docType{package}
+\name{growthbreaks-package}
+\alias{growthbreaks}
+\alias{growthbreaks-package}
+\title{growthbreaks: Spatio-temporal Growth Anomaly Detection}
+\description{
+Implements the GAM-based breakpoint detection method for length-at-age observations as described Kapur et. al. 2019.
+
+Implements the GAM-based breakpoint detection method for length-at-age observations as described Kapur et. al. 2019.
+}
+\seealso{
+Useful links:
+\itemize{
+  \item \url{https://afsc-assessments.github.io/growthbreaks/}
+}
+
+
+Useful links:
+\itemize{
+  \item \url{https://afsc-assessments.github.io/growthbreaks/}
+}
+
+}
+\keyword{internal}
diff --git a/src/TMB/sptlVB_Sel_Sigma.cpp b/src/TMB/growthbreaks.cpp
similarity index 100%
rename from src/TMB/sptlVB_Sel_Sigma.cpp
rename to src/TMB/growthbreaks.cpp
diff --git a/src/growthbreaks.dll b/src/growthbreaks.dll
index 3dad8aa96839529e2ce4c59bc4e7be507ba6c48c..5ad7789108c46f2f0df5154cafd7a008cb5ae4df 100644
GIT binary patch
delta 33
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delta 33
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