Added batch correction to the analysis

ag-warscheid · Feb 23, 2024 · e40616b · e40616b
1 parent 09aeef0
commit e40616b
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Showing 12 changed files with 340 additions and 22 deletions.
diff --git a/.gitignore b/.gitignore
@@ -172,7 +172,7 @@ cython_debug/
 #  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
 #  and can be added to the global gitignore or merged into this file.  For a more nuclear
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
-#.idea/
+.idea/
 
 ### Python Patch ###
 # Poetry local configuration file - https://python-poetry.org/docs/configuration/#local-configuration
@@ -184,5 +184,4 @@ poetry.toml
 # LSP config files
 pyrightconfig.json
 
-# End of https://www.toptal.com/developers/gitignore/api/jupyternotebooks,python
-
+# End of https://www.toptal.com/developers/gitignore/api/jupyternotebooks,python
diff --git a/01_ap-ms.ipynb b/01_ap-ms.ipynb
diff --git a/02_importomics.ipynb b/02_importomics.ipynb
@@ -2193,7 +2193,12 @@
    "source": [
     "import re\n",
     "\n",
+    "import matplotlib\n",
     "import matplotlib.pyplot as plt\n",
+    "\n",
+    "matplotlib.rcParams[\"pdf.fonttype\"] = 42\n",
+    "matplotlib.rcParams[\"ps.fonttype\"] = 42\n",
+    "\n",
     "import numpy as np\n",
     "import pandas as pd\n",
     "import seaborn as sns\n",

diff --git a/apms_fig1.pdf b/apms_fig1.pdf
diff --git a/apms_fig2.pdf b/apms_fig2.pdf
diff --git a/apms_fig3.pdf b/apms_fig3.pdf
diff --git a/apms_fig4.pdf b/apms_fig4.pdf
diff --git a/importomics_fig1.pdf b/importomics_fig1.pdf
diff --git a/importomics_fig2.pdf b/importomics_fig2.pdf
diff --git a/importomics_fig3.pdf b/importomics_fig3.pdf
diff --git a/importomics_fig4.pdf b/importomics_fig4.pdf
diff --git a/importomics_fig5.pdf b/importomics_fig5.pdf