This repository contains a Python script based on the work of the VaxuraUniProt project. It connects to UniProtKB, retrieves reviewed proteins information for a specific organism, extracts their cellular location, and saves the data in a CSV file.
- Getting Started
- Usage
- Prerequisites
- Installing
- Running the tests
- Built With
- Contributing
- Versioning
- Authors
- License
- Acknowledgments
These instructions will get you a copy of the project up and running on your local machine for development and testing purposes.
You can Use DownloaderUniprot.ipynb to Use This code on Google Colab For Faster Network Connection Dont Forget To Connect Google Drive To colab First
Ensure that you have the following installed on your local machine:
Python 3.8 or later
pip (Python Package Installer)
Clone the repo to your local machine:
git clone https://github.com/ahorazahedi/VaxuraUniProt.gitGo to the project directory:
cd VaxuraUniProtInstall the necessary packages:
pip install biopythonTo run the script, you can use the command below.Update Organisms.txt Based on its Default Format And Get Results in Download Folder It Also Zip When all jobs are Done To Make its Transfer Easily
python Downloader.pyThis will create a CSV file named uniprot_<organism>_proteins.csv in the current directory.
(Add information about how to run tests if available)
Please read CONTRIBUTING.md for details on our code of conduct, and the process for submitting pull requests.
We use SemVer for versioning. For the versions available, see the tags on this repository.
- Ahora Zahedi - Initial work - Ahora zahedi
See also the list of contributors who participated in this project.
This project is licensed under the MIT License - see the [LICENSE.md](https://github.com/ahorazahedi/VaxuraUniProt