.travis.yml

matrix:
  include:
    - language: r
      r:
        - release
      sudo: false
      cache: packages
      addons:
        apt:
          packages:
            - libgit2-dev
            - libssl-dev
            - libxml2-dev
      r_check_args: --as-cran --run-donttest
      r_binary_packages:
        - devtools
        - roxygen2
        - testthat
      before_install:
        - R -e 'install.packages(c("alakazam", "ape", "CollessLike", "data.table", "devtools", "dplyr", "entropy", "HDMD", "jsonlite", "magrittr", "Peptides", "RecordLinkage", "roxygen2", "shazam", "seqinr", "stringdist", "stringr", "testthat", "textmineR", "yaml"))'
        - R -e 'if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") }; BiocManager::install("Biostrings")'
        - R -e 'devtools::install_github("matsengrp/sumrep", ref="master", dependencies=TRUE)'
      install:
        - R -e 'devtools::install_deps(dep=T)'
      before_script:
        - R -e 'devtools::document()'
      script:
        - R CMD build .
        - R CMD check *tar.gz --as-cran --run-donttest 
        - Rscript -e "devtools::install('.')"
        - inst/repcred.R -r inst/extdata/ExampleDb.tsv -o outdir -d FALSE