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ChangeLog.md

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sourcetracker2 changelog

2.0.1-dev (changes since 2.0.1 go here)

  • Updated subsample function to be compatible with new version of pandas

  • A unified API for sourcetracking with Gibbs sampling, including leave-one-out cross-validation, has been created and is accessible as sourcetracker.gibbs.

  • Heatmap plotting of mixing proportion means has been added to the output of the command line interface, and to the public API as sourcetracker.gibbs.plot_heatmap.

  • The per-sink feature assignments are recorded for every run and written to the output directory. They are named as X.contingency.txt where X is the name of a sink.

  • Sample with replacement functionality has been added

2.0.1

  • Initial alpha release.
  • Re-implements the Gibbs sampler from @danknights's SourceTracker..
  • click-based command line interface through the sourcetracker2 command.
  • Supports parallel execution using the --jobs parameter.