Annotating true negative (TN) nodes in napari #143
KristinaUlicna
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Closes #117 |
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When annotating the image in napari, the annotation tool allows you to do the following:
There is currently no way to explicitly annotate true negative nodes, as one can only draw over real objects. All unannotated nodes are currently left alone with a label 'Unknown', resulting in no information about the TN nodes at GCN train time, which leads to overfitting towards the TP class.
As a design choice, we decided to implicitly label all protruding nodes which form a TN (magenta) edge as TN nodes. The rationale is that the nodes which are a part of an object (even a different one) would themselves be labelled as TP within their respective object.
The implementation in code is as follows:
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