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# -*- coding: utf-8 -*- | ||
# This CITATION.cff file was initially generated with cffinit. | ||
# Visit https://bit.ly/cffinit to generate yours today! | ||
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cff-version: 1.2.0 | ||
title: alchemlyb | ||
message: >- | ||
If you use this software, please cite it using the | ||
metadata from this file. | ||
type: software | ||
authors: | ||
- email: dotsdl@gmail.com | ||
given-names: David L. | ||
family-names: Dotson | ||
orcid: 'https://orcid.org/0000-0001-5879-2942' | ||
affiliation: Datryllic LLC | ||
- given-names: Ian M. | ||
family-names: Kenney | ||
orcid: 'https://orcid.org/0000-0002-9749-8866' | ||
affiliation: Kenney Consulting, LLC | ||
- given-names: Oliver | ||
family-names: Beckstein | ||
email: obeckste@asu.edu | ||
affiliation: Arizona State University | ||
orcid: 'https://orcid.org/0000-0003-1340-0831' | ||
- given-names: Shuai | ||
family-names: Liu | ||
orcid: 'https://orcid.org/0000-0002-8632-633X' | ||
affiliation: Silicon Therapeutics LLC | ||
- given-names: Travis | ||
family-names: Jensen | ||
- given-names: Bryce | ||
family-names: Allen | ||
orcid: 'https://orcid.org/0000-0002-0804-8127' | ||
affiliation: Differentiated Therapeutics | ||
- given-names: Dominik | ||
family-names: Wille | ||
affiliation: Freie Universität Berlin | ||
- given-names: Victoria | ||
family-names: Lim | ||
orcid: 'https://orcid.org/0000-0003-4030-9312' | ||
affiliation: University of California Irvine | ||
- given-names: Hyungro | ||
family-names: Lee | ||
orcid: 'https://orcid.org/0000-0002-4221-7094' | ||
affiliation: Pacific Northwest National Laboratory | ||
- given-names: Mohammad Soroush | ||
family-names: Barhaghi | ||
orcid: 'https://orcid.org/0000-0001-8226-7347' | ||
affiliation: Wayne State University | ||
- given-names: Zhiyi | ||
family-names: Wu | ||
affiliation: Exscientia plc | ||
orcid: 'https://orcid.org/0000-0002-7615-7851' | ||
email: william@zhiyiwu.me | ||
- given-names: Alexander | ||
family-names: Schlaich | ||
orcid: 'https://orcid.org/0000-0002-4250-363X' | ||
affiliation: University of Stuttgart | ||
- given-names: Jérôme | ||
family-names: Hénin | ||
orcid: 'https://orcid.org/0000-0003-2540-4098' | ||
affiliation: CNRS | ||
- given-names: Thomas T. | ||
family-names: Joseph | ||
orcid: 'https://orcid.org/0000-0003-1323-3244' | ||
affiliation: University of Pennsylvania | ||
- given-names: Irfan | ||
family-names: Alibay | ||
orcid: 'https://orcid.org/0000-0001-5787-9130' | ||
affiliation: Open Molecular Software Foundation | ||
- given-names: Pascal | ||
family-names: Merz | ||
affiliation: PM Scientific Consulting | ||
orcid: 'https://orcid.org/0000-0002-7045-8725' | ||
- given-names: Domenico | ||
family-names: Marson | ||
orcid: 'https://orcid.org/0000-0003-1839-9868' | ||
affiliation: University of Trieste | ||
- given-names: Haoxi | ||
family-names: Li | ||
orcid: 'https://orcid.org/0009-0004-8369-1042' | ||
affiliation: University of California Irvine | ||
identifiers: | ||
- type: swh | ||
value: 'swh:1:dir:4cd266754be413312ee7ef3f1f7fbe05b38192cf' | ||
description: >- | ||
The Software Heritage identifier for the top level | ||
directory of the repository. | ||
repository-code: 'https://github.com/alchemistry/alchemlyb' | ||
url: 'https://alchemlyb.readthedocs.io' | ||
abstract: >- | ||
alchemlyb is an open-source Python software package for | ||
the analysis of alchemical free energy calculations. Its | ||
functionality contains individual composable building | ||
blocks for all aspects of a full typical free energy | ||
analysis workflow, starting with the extraction of raw | ||
data from the output of diverse molecular simulation | ||
packages, moving on to data preprocessing tasks such as | ||
decorrelation of time series, using various estimators to | ||
derive free energy estimates from simulation samples, and | ||
finally providing quality analysis tools for data | ||
convergence checking and visualization. alchemlyb also | ||
contains high-level end-to-end workflows that combine | ||
multiple building blocks into a user-friendly analysis | ||
pipeline from the initial data input stage to the final | ||
results. | ||
keywords: | ||
- Python | ||
- free energy | ||
- molecular dynamics | ||
- alchemistry | ||
license: BSD-3-Clause |