DESCRIPTION

Package: SmoothDescent
Type: Package
Title: Application of map-based genotype correction algorithm Smooth Descent
Version: 0.1.0
License: GPL-2
Encoding: UTF-8
LazyData: True
Depends: R (>= 3.5.0)
Imports: 
  MDSMap,
  polymapR,
  assertthat,
  combinat,
  scales,
  smacof
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.2
Authors@R: c(person("Alejandro", "Therese Navarro", email = "alejandro.theresenavarro@wur.nl", role = c("aut","cre")),
             person("Peter", "Boruke", role = c("ctb","rev","ths")),
             person("Eric", "van de Weg", role = c("rev","ths")),
             person("Chris","Maliepaard",role = c("rev","ths")))
Description: Map-based genotype correction algorithm that calculates Identity-by-descent probabilities based
  on 1) homologue assignment matrix (phased genotypes) and 2) a preliminary genetic map. Mapping is also implemented
  using R packages MDSmap and PolymapR, creating a map-building pipeline that can handle genotyping errors at 
  any ploidy level. The smooth descent algorithm is based on SMOOTH (van Os et al. 2006) <doi:10.1007/s00122-005-0124-y>.
  A developer version of this package can be found on Github <https://github.com/Alethere/SmoothDescent>