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874 Open 1,165 Closed
874 Open 1,165 Closed
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Issues list

Corrupt SAM/BAM file due to NULL injected into MD tag with two-pass
#2226 opened Oct 8, 2024 by btownshend
soloType CB_UMI_Complex is incompatible with soloCBwhitelist None
#2225 opened Oct 7, 2024 by aepstein96
Reference genome file download problem
#2224 opened Oct 6, 2024 by FeeFaysalTusar
Add index sequence to Unmapped read FASTQ headers
#2223 opened Oct 3, 2024 by andrewkennard
STARsolo run with --soloType CB_UMI_Complex uses too much memory.
#2222 opened Oct 1, 2024 by brgew
1
Much fewer than expected exons.
#2221 opened Sep 30, 2024 by EvanKomp
--soloType CB_UMI_Complex ,didn't match barcodes or UMIs
#2219 opened Sep 27, 2024 by StardDii
1
--outSAMunmapped Within some reads being lost
#2218 opened Sep 26, 2024 by alexander-e-f-smith
Error in compiling in linux
#2217 opened Sep 26, 2024 by faraza621
Analyzing SMART-Seq data (paired end) as CB_UMI_Simple
#2216 opened Sep 20, 2024 by pchaturvedi-takara
STARsolo parameters to match new 10x GEM chemistry
#2215 opened Sep 19, 2024 by ekiernan
STAR solo adapter sequences all A's after 31 bp
#2214 opened Sep 16, 2024 by mohammedmsk
A question about align reverse forward stranded RNAseq data
#2211 opened Sep 9, 2024 by QianhuiWan
Question about sequencing saturation
#2210 opened Sep 9, 2024 by zk-P
Gff3, no gene name in ouput - MissingGeneID
#2209 opened Sep 7, 2024 by desmodus1984
Error during mapping to mitochondrial genome
#2208 opened Sep 5, 2024 by desmodus1984
Only one sample is Mapped
#2207 opened Sep 4, 2024 by Gabriela-PH
3
STARsolo UMI calling problem (UMI position shift) after cell barcode correction by barcode whitelist
#2205 opened Aug 30, 2024 by s-shichino1989
STARsolo for chimeric reads
#2203 opened Aug 23, 2024 by Sogand65
FATAL ERROR in input read file: the total length of barcode sequence is 151 not equal to expected 28, and also not mapped reads
#2202 opened Aug 22, 2024 by lopezCascales
1
STARSolo, alignment of Scell from different lanes
#2201 opened Aug 22, 2024 by oneito
[2.7.10b] Read length in FATAL ERROR message does not match actual read length
#2200 opened Aug 22, 2024 by sbresnahan
2
Fatal INPUT FILE error, no exon lines in the GTF file
#2199 opened Aug 21, 2024 by Alecrim24
Alignement of viral genome with reads from infected host
#2198 opened Aug 20, 2024 by LioLenr
Some reads do not seem to be assigned to genes correctly by starsolo
#2197 opened Aug 20, 2024 by zhouyiqi91
ProTip! no:milestone will show everything without a milestone.