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mapping performance improvement #773

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mapping performance improvement #773

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Commits on Oct 27, 2019

  1. extract function

    @alexey0308
    alexey0308 committed Oct 27, 2019
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Commits on Nov 1, 2019

  1. add const

    @alexey0308
    alexey0308 committed Nov 1, 2019
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  2. add const

    @alexey0308
    alexey0308 committed Nov 1, 2019
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  3. update const declarations

    @alexey0308
    alexey0308 committed Nov 1, 2019
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  4. avoid conversion from int to char for known output

    @alexey0308
    alexey0308 committed Nov 1, 2019
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  5. style

    @alexey0308
    alexey0308 committed Nov 1, 2019
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  6. style

    @alexey0308
    alexey0308 committed Nov 1, 2019
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  7. add a predicate function [isAlignToSkip] to skip alignments early 

    * [stitchWindowAligns()] used to create a new [Transcript] instance
irregardless of if it will be successfully stitched to the transcript.
Early check allows to check for most common reasons to reject
the alignment.

* To ease reading, `WA[iA]` is aliased as `align`.

* minor formatting
    @alexey0308
    alexey0308 committed Nov 1, 2019
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  8. add const 

    - const char* R
- const uiWA* WA
    @alexey0308
    alexey0308 committed Nov 1, 2019
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  9. adjust style

    @alexey0308
    alexey0308 committed Nov 1, 2019
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