metrichor-cli-configuredependencies.sh

#!/usr/bin/env bash

# Prior to running this script you will need to unzip the metrichor tarball into your home directory.
# You will need to have installed a gcc, I've found 5.4.0 works well.
# You can use easybuild to install a gcc compiler without root permissions see here:
# https://github.com/hpcugent/easybuild/wiki/Step-by-step-guide
# To install hdf5 check out this website here:
# http://nugridstars.org/work-packages/io-technologies/hdf5-useepp-format/installing-hdf5

# This script is designed to allow those without root permissions to install metrichor into their home-directory.
current_directory=$(echo $(pwd))

# Set versions
nvm_version="5.12.0"
metrichor_version="2.40.16"
gcc_version="5.4.0"

# Set and export compiler flags
export CXX=$HOME/.local/easybuild/software/GCC/$gcc_version/bin/g++
export CC=$HOME/.local/easybuild/software/GCC/$gcc_version/bin/gcc
export LD_LIBRARY_PATH=$HOME/.local/easybuild/software/GCC/$gcc_version/lib/:$HOME/.local/easybuild/software/GCC/$gcc_version/lib64/:$LD_LIBRARY_PATH

# Set hdf5 flag
HDF5_HOME=$HOME/src/hdf5/

# Install nvm
cd $HOME/nvm-master
./install.sh


export NVM_DIR=$HOME/.nvm
source $NVM_DIR/nvm.sh  # This loads nvm

#Change to metrichor directory and install nvm and npm
cd $HOME/metrichor-cli-$metrichor_version

nvm install $nvm_version

# npm needs to be installed globally, otherwise I get errors I haven't been able to fix.
# export path to npm and node
# export PATH=$PATH:$HOME/.nvm/versions/node/v5.12.0/bin/
npm install npm -g

npm install hdf5 -ws:verbose -g

# export path to metrichor commandline agent
export PATH=$PATH:$HOME/metrichor-cli-2.40.16/bin/

# export node path to link to hdf5 module
export NODE_PATH=$HOME/.nvm/versions/node/v5.12.0/lib/node_modules/

# change back to current directory
cd $current_directory