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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method(plot,delboy)
S3method(print,delboy)
export(all_combinations_treat_samples)
export(assemble_elnet_hits)
export(batch_correct)
export(calc_perf_pval_windows)
export(calculate_bayes_factors_2dkcde)
export(calculate_perf_stats)
export(combine_validation_original_hits)
export(estimate_nonnull_logfc_distr)
export(estimate_number_non_nulls)
export(evaluate_performance_deg_calls)
export(exclude_predicted_FP_perf)
export(extract_grid_decision_boundary)
export(get_deseq2_results)
export(get_performance_stats)
export(hits)
export(make_coef_matrix)
export(make_delboy_hit_comparison_table)
export(make_design_matrix)
export(make_treat_factor)
export(perf_stats_deg)
export(predict_FP_delboy)
export(prep_bthin_matrix_diffrep)
export(prep_count_matrix)
export(prep_elnet_data)
export(process_decision_boundary)
export(run_delboy)
export(run_deseq2)
export(run_elnet_logistic_reg)
export(smooth_decision_boundary)
export(svm_false_positive_classification)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,results)
importFrom(combinat,combn)
importFrom(crayon,blue)
importFrom(crayon,green)
importFrom(crayon,magenta)
importFrom(crayon,red)
importFrom(dplyr,"%>%")
importFrom(dplyr,arrange)
importFrom(dplyr,between)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,rowwise)
importFrom(dplyr,sample_n)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(e1071,svm)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_cartesian)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(glmnet,cv.glmnet)
importFrom(glmnet,glmnet)
importFrom(grDevices,chull)
importFrom(graphics,hist)
importFrom(graphics,lines)
importFrom(ks,kcde)
importFrom(locfdr,locfdr)
importFrom(magrittr,"%<>%")
importFrom(progress,progress_bar)
importFrom(rlang,"!!")
importFrom(rlang,":=")
importFrom(rlang,sym)
importFrom(seqgendiff,thin_diff)
importFrom(smoothr,smooth_ksmooth)
importFrom(stats,IQR)
importFrom(stats,coef)
importFrom(stats,ecdf)
importFrom(stats,median)
importFrom(stats,predict)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,smooth.spline)
importFrom(sva,ComBat)
importFrom(svmpath,svmpath)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(utils,read.delim)
importFrom(utils,tail)