apm-cnv

The cnvkit and ichorcna pipelines for cfDNA

Postprocessing of canary, cnvkit, ichorcna and wisecondor results for cfDNA

for i in wisecondor/testSamples/Sample_HSTAMP*-T1_Tumor.sorted.samtools-deduped.sorted.offtarget.txt; do python3 wisecondorFormatter.py $i; done

Name		Name	Last commit message	Last commit date
Latest commit History 51 Commits
cnvkit		cnvkit
ichorcna		ichorcna
tables		tables
.gitignore		.gitignore
CNAdefs.py		CNAdefs.py
README.md		README.md
controlsZscore.py		controlsZscore.py
convolution13q.py		convolution13q.py
generateTFPN-all.sh		generateTFPN-all.sh
generateTFPN-cedric.py		generateTFPN-cedric.py
generateTFPN.py		generateTFPN.py
generatedfROC.py		generatedfROC.py
plotconvolution-final.py		plotconvolution-final.py
plotconvolution.py		plotconvolution.py
weightedmeanvalue.py		weightedmeanvalue.py
wisecondorFormatter.py		wisecondorFormatter.py

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