-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Adding new vocabulary for GENO Terms
- Loading branch information
1 parent
9023f89
commit bdee03a
Showing
6 changed files
with
184 additions
and
59 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
52 changes: 0 additions & 52 deletions
52
src/main/resources/db/migration/v0.38.0.26__add_agm_allele_association.sql
This file was deleted.
Oops, something went wrong.
176 changes: 176 additions & 0 deletions
176
src/main/resources/db/migration/v0.38.0.27__add_agm_allele_association.sql
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,176 @@ | ||
| CREATE TABLE public.agmalleleassociation ( | ||
| id bigint NOT NULL, | ||
| datecreated timestamp(6) with time zone, | ||
| dateupdated timestamp(6) with time zone, | ||
| dbdatecreated timestamp(6) with time zone, | ||
| dbdateupdated timestamp(6) with time zone, | ||
| internal boolean DEFAULT false NOT NULL, | ||
| obsolete boolean DEFAULT false NOT NULL, | ||
| zygosity character varying(255), | ||
| createdby_id bigint, | ||
| updatedby_id bigint, | ||
| agmalleleassociationobject_id bigint, | ||
| agmassociationsubject_id bigint, | ||
| relation_id bigint | ||
| ); | ||
|
|
||
| CREATE SEQUENCE public.agmalleleassociation_seq | ||
| START WITH 1 | ||
| INCREMENT BY 50 | ||
| NO MINVALUE | ||
| NO MAXVALUE | ||
| CACHE 1; | ||
|
|
||
| ALTER TABLE ONLY public.agmalleleassociation ADD CONSTRAINT agmalleleassociation_pkey PRIMARY KEY (id); | ||
|
|
||
| CREATE INDEX agmalleleassociation_agmalleleassociationobject_index ON public.agmalleleassociation USING btree (agmalleleassociationobject_id); | ||
| CREATE INDEX agmalleleassociation_agmassociationsubject_index ON public.agmalleleassociation USING btree (agmassociationsubject_id); | ||
| CREATE INDEX agmalleleassociation_createdby_index ON public.agmalleleassociation USING btree (createdby_id); | ||
| CREATE INDEX agmalleleassociation_internal_index ON public.agmalleleassociation USING btree (internal); | ||
| CREATE INDEX agmalleleassociation_obsolete_index ON public.agmalleleassociation USING btree (obsolete); | ||
| CREATE INDEX agmalleleassociation_relation_index ON public.agmalleleassociation USING btree (relation_id); | ||
| CREATE INDEX agmalleleassociation_updatedby_index ON public.agmalleleassociation USING btree (updatedby_id); | ||
|
|
||
| ALTER TABLE ONLY public.agmalleleassociation ADD CONSTRAINT agmalleleassociation_agmalleleassociationobject_id FOREIGN KEY (agmalleleassociationobject_id) REFERENCES public.allele(id); | ||
| ALTER TABLE ONLY public.agmalleleassociation ADD CONSTRAINT agmalleleassociation_agmassociationsubject_id FOREIGN KEY (agmassociationsubject_id) REFERENCES public.affectedgenomicmodel(id); | ||
| ALTER TABLE ONLY public.agmalleleassociation ADD CONSTRAINT agmalleleassociation_createdby_id FOREIGN KEY (createdby_id) REFERENCES public.person(id); | ||
| ALTER TABLE ONLY public.agmalleleassociation ADD CONSTRAINT agmalleleassociation_updatedby_id FOREIGN KEY (updatedby_id) REFERENCES public.person(id); | ||
| ALTER TABLE ONLY public.agmalleleassociation ADD CONSTRAINT agmalleleassociation_relation_id FOREIGN KEY (relation_id) REFERENCES public.vocabularyterm(id); | ||
|
|
||
|
|
||
| INSERT INTO vocabularytermset(id, name, vocabularylabel, vocabularytermsetvocabulary_id) SELECT nextval('vocabularytermset_seq'), 'AGM Allele Association Relation', 'agm_allele_relation', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'agm_relation'; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association Relation' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'contains' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'agm_relation' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
|
|
||
| INSERT INTO vocabulary (id, name, vocabularylabel) VALUES (nextval('vocabulary_seq'), 'Geno Terms', 'geno_terms'); | ||
|
|
||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000602', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000603', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000604', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000605', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000606', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000135', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000136', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000137', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
| INSERT INTO vocabularyterm (id, name, vocabulary_id) SELECT nextval('vocabularyterm_seq'), 'GENO:0000134', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
|
|
||
| INSERT INTO vocabularytermset(id, name, vocabularylabel, vocabularytermsetvocabulary_id) SELECT nextval('vocabularytermset_seq'), 'AGM Allele Association GENO Terms', 'agm_allele_association_geno_terms', id FROM vocabulary WHERE vocabulary.vocabularylabel = 'geno_terms'; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000602' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000603' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000604' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000605' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000606' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000135' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000136' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000137' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; | ||
|
|
||
| INSERT INTO vocabularytermset_vocabularyterm (vocabularytermsets_id, memberterms_id) | ||
| WITH | ||
| t1 AS ( | ||
| SELECT id FROM vocabularytermset WHERE name = 'AGM Allele Association GENO Terms' | ||
| ), | ||
| t2 AS ( | ||
| SELECT id FROM vocabularyterm WHERE name = 'GENO:0000134' AND vocabulary_id = ( | ||
| SELECT id FROM vocabulary WHERE vocabularylabel = 'geno_terms' | ||
| ) | ||
| ) | ||
| SELECT t1.id, t2.id FROM t1,t2; |