Update self_runner_test.yml #50
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| name: Loader PR Test | |
| on: | |
| workflow_dispatch: {} | |
| push: | |
| branches: | |
| - 'fb_ansible_test' | |
| jobs: | |
| setup: | |
| runs-on: flysql26-dispatch | |
| outputs: | |
| uuid: ${{ steps.generate_uuid.outputs.uuid }} | |
| steps: | |
| - name: Generate UUID | |
| id: generate_uuid | |
| run: | | |
| UUID=$(openssl rand -hex 16) | |
| echo "UUID=$UUID" | |
| echo "UUID=$UUID" >> $GITHUB_ENV | |
| echo "::set-output name=uuid::$UUID" | |
| start-runner: | |
| runs-on: flysql26-dispatch | |
| needs: setup | |
| outputs: | |
| uuid: ${{ steps.set_output_uuid.outputs.uuid }} | |
| steps: | |
| - name: Start Dockerized Runner | |
| id: start_dockerized_runner | |
| uses: alliance-genome/agr_github_runner/.github/actions/start_runner@main | |
| with: | |
| UUID: ${{ needs.setup.outputs.uuid }} | |
| ACCESS_TOKEN: ${{ secrets.CREATE_RUNNER_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| - name: Set Output UUID | |
| id: set_output_uuid | |
| run: echo "::set-output name=uuid::${{ needs.setup.outputs.uuid }}" | |
| use-runner: | |
| needs: start-runner | |
| runs-on: ${{ needs.start-runner.outputs.uuid }} | |
| steps: | |
| - name: Log in to ECR | |
| uses: alliance-genome/agr_github_runner/.github/actions/login_to_ecr@main | |
| with: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| - name: Construct NEO_ENV_IMAGE | |
| id: construct-image | |
| env: | |
| REGISTRY: 100225593120.dkr.ecr.us-east-1.amazonaws.com | |
| DOCKER_PULL_TAG: "stage" # Adjust as needed | |
| run: echo "NEO_ENV_IMAGE=${{ env.REGISTRY }}/agr_neo4j_env:${{ env.DOCKER_PULL_TAG }}" >> $GITHUB_ENV | |
| - name: Start Neo4j Environment | |
| uses: alliance-genome/agr_github_runner/.github/actions/start_neo4j_env@main | |
| - name: Checkout PR code | |
| uses: actions/checkout@v2 | |
| with: | |
| repository: alliance-genome/agr_loader | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Set environment variables | |
| run: | | |
| echo "NET=testing" >> $GITHUB_ENV | |
| echo "REG=100225593120.dkr.ecr.us-east-1.amazonaws.com" >> $GITHUB_ENV | |
| echo "LOGOPT='--log-driver=gelf --log-opt gelf-address=udp://logs.alliancegenome.org:12201'" >> $GITHUB_ENV | |
| echo "DOCKER_PULL_TAG=stage" >> $GITHUB_ENV | |
| echo "ALLIANCE_RELEASE=7.3.0" >> $GITHUB_ENV | |
| - name: Build Docker container | |
| env: | |
| DOCKER_BUILDKIT: 1 | |
| run: | | |
| docker build --pull --no-cache --force-rm --build-arg DOCKER_PULL_TAG=${{ env.DOCKER_PULL_TAG }} --build-arg REG=${{ env.REG }} -t ${{ env.REG }}/agr_loader_run:${{ env.NET }}_loader . | |
| - name: Create Docker network | |
| run: docker network create testing | |
| - name: Run Loader in Test Mode | |
| env: | |
| LOADER_TEST_NAME: "agr.testing.loader.test" | |
| LOADER_TEST_RUN_IMAGE: "${{ env.REG }}/agr_loader_run:${{ env.NET }}_loader" | |
| LOG_SERVER_ADDRESS: "udp://logs.alliancegenome.org:12201" | |
| NEO_VOLUME_NAME: "/data" | |
| NET: "testing" | |
| API_ACCESS_TOKEN: ${{ secrets.API_ACCESS_TOKEN }} | |
| DOWNLOAD_HOST: "download.alliancegenome.org" | |
| TEST_SET: "true" | |
| ALLIANCE_RELEASE: "7.3.0" | |
| FMS_API_URL: "https://fms.alliancegenome.org" | |
| AWS_ACCESS_KEY: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| GENERATE_REPORTS: "true" | |
| NEO_SERVER_NAME: "stage-neo4j.alliancegenome.org" # Use the name from the constructed NEO_ENV_IMAGE | |
| run: | | |
| docker run --rm \ | |
| --name $LOADER_TEST_NAME \ | |
| --env API_KEY=$API_ACCESS_TOKEN \ | |
| --env DEBUG=False \ | |
| --env DOWNLOAD_HOST=$DOWNLOAD_HOST \ | |
| --env TEST_SET=$TEST_SET \ | |
| --env ALLIANCE_RELEASE=$ALLIANCE_RELEASE \ | |
| --env FMS_API_URL=$FMS_API_URL \ | |
| --env AWS_ACCESS_KEY=$AWS_ACCESS_KEY \ | |
| --env AWS_SECRET_KEY=$AWS_SECRET_KEY \ | |
| --env GENERATE_REPORTS=$GENERATE_REPORTS \ | |
| --env NEO4J_HOST=$NEO_SERVER_NAME \ | |
| --network $NET \ | |
| --volume $NEO_VOLUME_NAME:/usr/src/app/tmp \ | |
| --log-driver=gelf --log-opt gelf-address=$LOG_SERVER_ADDRESS \ | |
| $LOADER_TEST_RUN_IMAGE | |
| - name: Remove Docker network | |
| run: docker network rm testing | |
| stop-runner: | |
| runs-on: flysql26-dispatch | |
| needs: use-runner | |
| steps: | |
| - name: Stop Dockerized Runner | |
| uses: alliance-genome/agr_github_runner/.github/actions/stop_runner@main | |
| with: | |
| UUID: ${{ needs.start-runner.outputs.uuid }} | |
| ACCESS_TOKEN: ${{ secrets.CREATE_RUNNER_TOKEN }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} |