Fall/Herbst-semester 2018
Mondays 9.00-9.45 (Y27-H-46), 10.00-10.45 (Y27-H-46)
Monday 11.00-11.45 (Y01-F-50)
Mr. Lukas Weber, final year PhD student, IMLS, UZH
Dr. Hubert Rehrauer, Group Leader of Genome Informatics at FGCZ
Prof. Dr. Mark Robinson, Associate Professor of Statistical Genomics, IMLS, UZH
Dr. Charlotte Soneson, Postdoctoral Associate, IMLS, UZH
| Date | Lecturer | Topic | Exercise | JC1 | JC2 |
|---|---|---|---|---|---|
| 17.09.2018 | Mark + Hubert | admin; mol. bio. basics | R markdown; git(hub) | ||
| 24.09.2018 | Hubert | NGS intro; exploratory data analysis | EDA in R | ||
| 01.10.2018 | Mark + Hubert | interactive technology/statistics session | group exercise: technology pull request | ||
| 08.10.2018 | Hubert | mapping | Rsubread | ||
| 15.10.2018 | Mark | limma + friends | linear model simulation + design matrices | ||
| 22.10.2018 | Hubert | RNA-seq quantification | RSEM | ||
| 29.10.2018 | Charlotte | hands-on session #1: RNA-seq | FASTQC/Salmon/etc. | X | |
| 05.11.2018 | Mark | edgeR+friends 1 | basic edgeR/voom | ||
| 12.11.2018 | Mark | edgeR+friends 2 | GLM/DEXSeq | ||
| 19.11.2018 | Mark | single-cell dim. reduction + clustering; FDR | conquer | ||
| 26.11.2018 | Lukas | hands-on session #2: cytometry | cytof null comparison | X | |
| 03.12.2018 | Hubert | classification | MLInterfaces | ||
| 10.12.2018 | Mark | loose ends: HMM, EM, robustness | segmentation, peak finding | ||
| 17.12.2018 | Mark | hands-on session #3: single-cell RNA-seq | full scRNA-seq pipeline | X |
Simply Statistics blog
Getting Genetics Done blog
Omics Omics blog
Assuming you have git installed locally, you can check out the entire set of course materials with the following command (from command line):
git clone https://github.com/sta426hs2018/material.git
Alternatively, for a ZIP file of the repository, you can click on the (green) 'Clone or download' (top right) and then click 'Download ZIP'.