From 04f23d48e6e33877cd8fdb22b26d7a9d4194e07d Mon Sep 17 00:00:00 2001 From: Martin Larralde Date: Wed, 20 Apr 2022 11:06:29 +0200 Subject: [PATCH] Fix remaining small issues with documentation --- docs/install.rst | 6 +++--- pyrodigal/_pyrodigal.pyx | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/docs/install.rst b/docs/install.rst index 5076254..2356ce1 100644 --- a/docs/install.rst +++ b/docs/install.rst @@ -40,10 +40,10 @@ A package recipe for Arch Linux can be found in the Arch User Repository under the name `python-pyrodigal `_. It will always match the latest release from PyPI. -Steps to install on ArchLinux depend on your `AUR helper `_ -(``yaourt``, ``aura``, ``yay``, etc.). Steps for ``aura`` are: +Steps to install on ArchLinux depend on your `AUR helper `_ +(``yaourt``, ``aura``, ``yay``, etc.). For ``aura``, you'll need to run: -.. console:: +.. code:: console $ aura -A python-pyrodigal diff --git a/pyrodigal/_pyrodigal.pyx b/pyrodigal/_pyrodigal.pyx index 6756965..c1410a8 100644 --- a/pyrodigal/_pyrodigal.pyx +++ b/pyrodigal/_pyrodigal.pyx @@ -15,8 +15,8 @@ Example: ... record = Bio.SeqIO.read(f, "fasta") Then use Pyrodigal to find the genes in *metagenomic* mode (without - training first), and then build a map of codon frequencies for each - gene:: + training first), for instance to build a map of codon frequencies for + each gene:: >>> from collections import Counter >>> import pyrodigal