From ad85a90265890a02873fa1e9c0c4520cfcb6582a Mon Sep 17 00:00:00 2001
From: Martin Larralde <martin.larralde@embl.de>
Date: Sat, 22 Oct 2022 13:52:03 +0200
Subject: [PATCH] Release v2.0.0-rc.1

---
 .github/workflows/package.yml |  2 +-
 CHANGELOG.md                  | 19 +++++++++++++++++--
 pyrodigal/_pyrodigal.pyx      |  8 ++++----
 pyrodigal/_version.py         |  2 +-
 4 files changed, 23 insertions(+), 8 deletions(-)

diff --git a/.github/workflows/package.yml b/.github/workflows/package.yml
index 8f1d643..804bdd0 100644
--- a/.github/workflows/package.yml
+++ b/.github/workflows/package.yml
@@ -3,7 +3,7 @@ name: Package
 on:
   push:
     tags:
-      - v*.*.*
+      - v*
 
 jobs:
 
diff --git a/CHANGELOG.md b/CHANGELOG.md
index d0228ec..0460c01 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,7 +6,23 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 
 
 ## [Unreleased]
-[Unreleased]: https://github.com/althonos/pyrodigal/compare/v1.1.2...HEAD
+[Unreleased]: https://github.com/althonos/pyrodigal/compare/v2.0.0-rc.1...HEAD
+
+
+## [v2.0.0-rc.1] - 2022-10-22
+[v2.0.0-rc.1]: https://github.com/althonos/pyrodigal/compare/v1.1.2...v2.0.0-rc.1
+
+### Added
+- MMX implementation of the SIMD prefilter.
+- Propert GFF headers and metadata section to GFF output.
+
+### Fixed
+- Out of bound access to sequence data in `Sequence._shine_dalgarno_mm` and `Sequence._shine_dalgarno_exact`.
+- Gene identifier being used instead of the sequence identifier in the GFF output ([#18](https://github.com/althonos/pyrodigal/issues/18)).
+
+### Changed
+- Rewrite SIMD prefilter using a generic template with C macros.
+- Make all write methods of `Genes` objects require a ``sequence_id`` argument instead of using the internal sequence number.
 
 
 ## [v1.1.2] - 2022-08-31
@@ -20,7 +36,6 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 - Configuration of platform-specific NEON flags in `setup.py` not being applied to the linker.
 
 
-
 ## [v1.1.1] - 2022-07-08
 [v1.1.1]: https://github.com/althonos/pyrodigal/compare/v1.1.0...v1.1.1
 
diff --git a/pyrodigal/_pyrodigal.pyx b/pyrodigal/_pyrodigal.pyx
index 696b308..69ff437 100644
--- a/pyrodigal/_pyrodigal.pyx
+++ b/pyrodigal/_pyrodigal.pyx
@@ -3209,7 +3209,7 @@ cdef class Genes:
         Returns:
             `int`: The number of bytes written to the file.
 
-        .. versionchanged:: 1.2.0
+        .. versionchanged:: 2.0.0
             Replaced optional``prefix`` argument with ``sequence_id``.
 
         """
@@ -3286,7 +3286,7 @@ cdef class Genes:
         Returns:
             `int`: The number of bytes written to the file.
 
-        .. versionchanged:: 1.2.0
+        .. versionchanged:: 2.0.0
             Replaced optional``prefix`` argument with ``sequence_id``.
 
         """
@@ -3333,7 +3333,7 @@ cdef class Genes:
         Returns:
             `int`: The number of bytes written to the file.
 
-        .. versionchanged:: 1.2.0
+        .. versionchanged:: 2.0.0
             Replaced optional``prefix`` argument with ``sequence_id``.
 
         """
@@ -3381,7 +3381,7 @@ cdef class Genes:
 
         .. versionadded:: 0.7.0
 
-        .. versionadded:: 1.2.0
+        .. versionadded:: 2.0.0
             The ``sequence_id`` argument.
 
         """
diff --git a/pyrodigal/_version.py b/pyrodigal/_version.py
index 72f26f5..8cc9434 100644
--- a/pyrodigal/_version.py
+++ b/pyrodigal/_version.py
@@ -1 +1 @@
-__version__ = "1.1.2"
+__version__ = "2.0.0-rc.1"