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amanzi.bib

@@ -0,0 +1,142 @@
+%
+%  Amanzi
+%
+
+@InProceedings{Wainwright-et-al::2016,
+  author   = {Wainwright, H. and Faybishenko, B. and Molins, S. and Davis, J. and Arora, B. and Pau, G. and 
+              Johnson, J. and Flash, G. and Denham, M. and Eddy-Dilek, C. and Moulton, D. and Lipnikov, K. and 
+              Gable, C. and Miller, T. and Baker, E. and Freedman, V. and Freshley, M},
+  title    = {Effective long-term monitoring strategies by integrating reactive transport models with in situ geochemical measurements},
+  booktitle= {Proceedings of the Waste Management Conference},
+  note     = {Phoenix, AZ, March 6–10},
+  year     = {2016},
+}
+
+@InProceedings{Wainwright-et-al::2015,
+  author   = {Wainwright, H. and Molins, S. and Krishnan, H. and Arora, B. and Romosan, A. and Davis, J.A. and 
+              Faybishenko, B. and Hubbard, S. and Flash, G. and Denham, M. and Eddy-Dilek, C. and Moulton, D. and Lipnikov, K. and 
+              Gable, C. and Miller, T. and Freshley, M},
+  title    = {Advanced simulation capability for environmental management, integrated toolsets and simulator to enhance public communication},
+  booktitle= {Proceedings of the Waste Management Conference},
+  note     = {Phoenix, AZ, March},
+  year     = {2015},
+}
+
+@InProceedings{Freshley-et-al::2014,
+  author   = {Freshley, M. and Scheibe, T. and Moulton, D. and Freedman, V. and Hubbard, S.S. and Finsterle, S. and 
+              Steefel, C.I. and Wainwright, H. and Flach, G. and Seitz, R. and Dixon, P. and Marble, J.},
+  title    = {Advanced Simulation Capability for Environmental Management Initial User Release},
+  booktitle= {Proceedings of the Waste Management Conference},
+  note     = {Phoenix, AZ, March 2-6},
+  year     = {2014},
+}
+
+@Article{Libera-et-al:JCH:2019,
+  author  = {Libera, A. and de~Barros, F.P.J. and Faybishenko, B. and Eddy-Dilek, C. and 
+             Denham, M. and Lipnikov, K. and Moulton, D. and Maco, B. and Wainwright, H.},
+  title   = {Climate change impact on residual contaminants under sustainable remediation},
+  journal = {Journal of Contaminant Hydrology},
+  volume  = {226},
+  pages   = {103518},
+  year    = {2019},
+  doi     = {10.1016/j.jconhyd.2019.103518},
+}
+
+@InProceedings{Wainwright-et-al::2020,
+  author   = {Wainwright, H. and Arora, B. and Hubbard, S. and Lipnikov, K. and Moulton, D. and 
+              Flach, G. and Eddy‐Dilek, C. and Denham, M.},
+  title    = {Sustainable Remediation in Complex Geologic Systems},
+  booktitle= {Encyclopedia of Inorganic and Bioinorganic Chemistry},
+  year     = {2020},
+  editor   = {Scott, R.A.},
+  doi      = {10.1002/9781119951438.eibc2562},
+}
+
+@InProceedings{Wainwright-et-al::2017,
+  author   = {Wainwright, H. and Faybishenko, B. and Molins, S. and Pau, G. and Denham, M. and 
+              Amidon, M. and Moulton, D. and Lipnikov, K. and Freedman, V. and Freshley, M. and Eddy-Dilek, C.},
+  title    = {Coupling big data analytics and reactive transport modeling for cost-effective groundwater monitoring},
+  booktitle= {Proceedings of the Waste Management Conference},
+  note     = {Phoenix, AZ, March 5–9},
+  year     = {2017},
+}
+
+@Article{Berre-et-al:2020,
+  author  = {Berre, I. and Boon, E.M. and Flemisch, B. and Fumagalli, A. and Gläser, D. and 
+             Keilegavlen, E. and Scotti, A. and Stefansson, I. and Tatomir, A. and Brenner, K. and 
+             Burbulla, S. and Devloo, P. and Duran, O. and Favino, M. and Hennicker, J. and 
+             Lee, I-H. and Lipnikov, K. and Masson, R. and Mosthaf, K. and Chiara Nestola, M.G. and 
+             Ni, C.-F. and Nikitin, K.L. and Schädle, P. and Svyatskiy, D. and Yanbarisov R. and Zulian, P.},
+  title   = {Verification benchmarks for single-phase flow in three-dimensional fractured porous media},
+  journal = {Advances in Water Resources},
+  volume  = {xxx},
+  year    = {2020},
+  note    = {in review, arXiv:2002.07005},
+}
+
+@Article{Bui-et-al:2018,
+  author  = {Bui, Q.M. and Wang, L. and Osei-Kuffuor, D.},
+  title   = {Algebraic multigrid preconditioners for two-phase flow in porous media with phase transitions},
+  journal = {Advances in Water Resources},
+  volume  = {114},
+  pages   = {19--28},
+  year    = {2018},
+  doi     = {10.1016/j.advwatres.2018.01.027},
+}
+
+@Article{Manzini-et-al:2017,
+  author  = {Manzini, G. and Lipnikov, K. and Moulton, J.D. and Shashkov, M.},
+  title   = {Convergence analysis of the mimetic finite difference method for elliptic problems with 
+             staggered discretizations of diffusion coefficients},
+  journal = {SIAM J. Numer. Anal.},
+  volume  = {55},
+  number  = {6},
+  pages   = {2956--2981}, 
+  year    = {2017},
+  doi     = {10.1137/16M1108479},
+}
+
+@Article{Bui-et-al:2017,
+  author  = {Bui, Q.M. and Elman, H. and Moulton, J.D.},
+  title   = {Algebraic multigrid preconditioners for multiphase flow in porous media},
+  journal = {SIAM J. Sci. Comput.},
+  volume  = {39},
+  number  = {5},
+  pages   = {S662--S680},
+  year    = {2017},
+  doi     = {10.1137/16M1082652},
+}
+
+@Article{Lipnikov-et-al:2016,
+  author  = {Lipnikov, K. and Moulton, D. and Svyatskiy, D.},
+  title   = {New preconditioning strategy for {J}acobian-free solvers for variably saturated flows with {R}ichards equation},
+  journal = {Adv. Water Resour.},
+  volume  = {94},
+  pages   = {11--22},
+  year    = {2016},
+  doi     = {10.1016/j.advwatres.2016.04.016},
+}
+
+@Article{Lipnikov-et-al:2016b,
+  author  = {Lipnikov, K. and Manzini, G. and Moulton, J.D. and Shashkov, M.},
+  title   = {The mimetic finite difference method for elliptic and parabolic problems with 
+             a staggered discretization of diffusion coefficient},
+  journal = {J. Comput. Phys.},
+  volume  = {305},
+  pages   = {111--126},
+  year    = {2016},
+  doi     = {10.1016/j.jcp.2015.10.031},
+}
+
+@Article{Garimella-et-al:2014,
+  author  = {Garimella, R.V. and Perkins, W.A. and Buksas, M.W. and Berndt, M. and Lipnikov, K. and
+             Coon, E. and Moulton, J.D. and Painter, S.L.},
+  title   = {Mesh infrastructure for coupled multiprocess geophysical simulations},
+  journal = {Procedia Engineering},
+  volume  = {82},
+  pages   = {34--45},
+  year    = {2014},
+  doi     = {10.1016/j.proeng.2014.10.371},
+}
+
+

app-765b5e7026c646b6f183.js.LICENSE.txt

@@ -0,0 +1,31 @@
+/*! Bundled license information:
+
+prismjs/prism.js:
+  (**
+   * Prism: Lightweight, robust, elegant syntax highlighting
+   *
+   * @license MIT <https://opensource.org/licenses/MIT>
+   * @author Lea Verou <https://lea.verou.me>
+   * @namespace
+   * @public
+   *)
+*/
+
+/**
+ * @license React
+ * react-server-dom-webpack.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
+/** @license React v16.13.1
+ * react-is.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */

ascem-internal.bib

@@ -0,0 +1,131 @@
+
+
+%
+%  ASCEM: Internal reports
+%
+@TechReport{ASCEM-SiteApps,
+  author       = {R. Seitz and M. Freshley and B. Faybishenko
+                  and S. Hubbard and D. Watson and R. Roback
+                  and J. Blink and A. Armstrong},
+  title        = {User Suggestions for ASCEM Requirements Documents},
+  institution  = {Savannah River National Laboratory},
+  year         = 2010,
+  number       = {SRNL-RP-2010-00856}
+}
+
+@TECHREPORT{ASCEM-SITE-102010-01,
+  author = {Hubbard, Susan et al.},
+  title = {ASCEM Phase 1 Demonstration},
+  institution = {Pacific Northwest National Laboratory},
+  year = 2010,
+  number = {ASCEM-SITE-102010-01},
+}
+
+@TECHREPORT{ASCEM-HPC-ProcessModels_2010,
+  author = {C. Steefel and D. Moulton and P. Lichtner et al.},
+  title  = {Mathematical Formulation Requirements and Specifications for the
+	    Process Models},
+  institution = {Lawerence Berkeley National Laboratory},
+  year = 2010,
+  number = {ASCEM-HPC-101510-0},
+}
+
+@TechReport{ASCEM-HPC-ProcessModels_2011,
+  author = 	 {C. Steefel and D. Moulton and P. Lichtner et al.},
+  title = 	 {Mathematical Formulation Requirements
+                  and Specifications for the Process Models},
+  institution =  {Lawerence Berkeley National Laboratory},
+  year = 	 2011,
+  number = 	 {ASCEM-HPC-2011-01-0a}
+}
+
+@TechReport{ASCEM_Amanzi_HighLevelDesign_2012,
+  author       = {J. D. Moulton and J. C. Meza and M. W. Buksas and 
+                  M. Day et al.},
+  title        = {High-Level Design of {A}manzi, 
+                  the Multi-Process High Performance Computing Simualtor},
+  institution  = {Office of Environmental Management},
+  year = 	 2012,
+  number = 	 {ASCEM-HPC-2011-03-1 (LANL: {LA-UR}~12-22193)},
+  address      = {United States Department of Energy, Washington, DC}
+}
+
+@TechReport{ASCEM-PIT-SystemRequirements_2010,
+  author = {Gorton et al.},
+  title = {System Requirements for ASCEM Platform and Integrated Toolsets},
+  institution = {Pacific Northwest National Laboratory},
+  year = {2010},
+  number = {ASCEM-PIT-102710-03}
+}
+
+% 
+%  Project Management: Quality Assurance Documentation
+% 
+@TechReport{ASCEM-PM-QAP_2010,
+  author      =	 {R. {Schrotke, Jr.} and S. Matthews},
+  title       =	 {{ASCEM} {P}roject Quality Assurance Plan},
+  institution =  {Office of Environmental Management},
+  year        =	 2010,
+  number      =	 {{ASCEM}-PM-QAP-110810 Rev. 0},
+  address      = {United States Department of Energy, Washington, DC}
+}
+
+@TechReport{ASCEM-PM-ISQAP-BasicPhase_2012,
+  author = 	 {R. {Schrotke, Jr.} and S. Matthews},
+  title = 	 {{ASCEM} {I}mplementation {S}oftware {Q}uality {A}ssurance 
+                  {P}lan -- {B}asic {P}hase},
+  institution  = {Office of Environmental Management},
+  year = 	 2012,
+  number = 	 {{ASCEM}-PM-2012-01-1},
+  address      = {United States Department of Energy, Washington, DC}
+}
+
+@TechReport{ASCEM-PM-CM-BasicPhase_2012,
+  author = 	 {R. {Schrotke, Jr.} and S. Matthews},
+  title = 	 {{ASCEM} {S}oftware {C}onfiguration {M}anagement {P}lan --
+                  {B}asic {P}hase},
+  institution  = {Office of Environmental Management},
+  year = 	 2012,
+  number = 	 {{ASCEM}-PM-2012-02-1},
+  address      = {United States Department of Energy, Washington, DC}
+}
+
+@TechReport{ASCEM-PM-VV-BasicPhase_2012,
+  author = 	 {R. {Schrotke, Jr.} and S. Matthews},
+  title = 	 {{ASCEM} {S}oftware {V}erification and {V}alidation {P}lan --
+                  {B}asic {P}hase},
+  institution  = {Office of Environmental Management},
+  year = 	 2012,
+  number = 	 {{ASCEM}-PM-2012-03-1},
+  address      = {United States Department of Energy, Washington, DC}
+}
+
+@TechReport{Freshley-et-al:2012,
+  author   = {Freshley, M. and Hubbard, S. and Gorton, I. and Moulton, J.D. and Steefel, C.I. and Freedman, V. and Wainwright, H. and et al.},
+  title    = {Advanced Simulation Capability for Environmental Management ({ASCEM}) phase II Demonstration},
+  institution = {Office of Environmental Management, United States Department of Energy, Washington, DC},
+  address  = {Sandia National Laboratories, Albuquerque, NM},
+  year     = {2012},
+  number   = {ASCEM-SITE-2012-01, also LA-UR 12-25496}, 
+}
+
+@TechReport{Moulton-et-al:2012,
+  author   = {Moulton, J.D. and Meza, J.C. and Buksas, M.W. and Day, M. and et al},
+  title    = {High-level design of {A}manzi, the multi-process high performance computing simulator},
+  institution = {Office of Environmental Management, United States Department of Energy, Washington, DC},
+  address  = {Sandia National Laboratories, Albuquerque, NM},
+  year     = {2012},
+  number   = {ASCEM-HPC-2011-03-1, also LA-UR 12-22193}, 
+}
+
+@TechReport{Hubbard-et-al:2010,
+  author   = {Hubbard, S. and Freshley, M. and Moulton, D. and Lichtner, P. and Bell, J. and et al.},
+  title    = {{ASCEM} Phase {I} Demonstration},
+  institution = {Office of Environmental Management, United States Department of Energy, Washington, DC},
+  address  = {Sandia National Laboratories, Albuquerque, NM},
+  year     = {2010},
+  number   = {ASCEM-SITE-102010-1}, 
+}
+
+
+