PCNtoolkit version 0.30

Minor release over 0.29

• Added functionality for plotting centiles in HBR
• Added support for SLURM (via normative_parallel)

PCNtoolkit version 0.29

• Bug fixes (e.g. HBR predict crash, normative_paralell support for .txt input)
• Added docstrings for most functions
• Fixed some problems with exception handling
• Formatted whole project with autopep8
• Addedd functionality to compute SHASH z-scores from normative.py
• Updated requirements
• Basic pytest continuous integration framework implemented

PCNtoolkit version 0.28

• Updated to PyMC5 (including migrating back-end to PyTensor)
• Added support for longitudinal normative modelling with BLR (see Buckova-Rehak et al 2023)
• Changed default optimiser for trend surface models (for scalability)

PCNtoolkit version 0.27

• Configured more sensible default options for HBR (random slope and intercept for mu and random intercept for sigma)
• Fixed a translation problem between the previous naming convention for HBR models (only Gaussian models) and the current naming (also SHASH models)
• Minor updates to fix synchronisation problems in PCNportal (related to the HBR updates above)
• Added configuration files for containerisation with Docker

PCNtoolkit version 0.26

• Multiple bug fixes, relating to imports, predict() and transfer() functions
• Added support for web portal
• Provided a wrapper for blr to use transfer() functionality
• Also streamlined tutorials (PCNtoolkit-demo), so that all tutorials run with this version

PCNtoolkit version 0.25

• Minor bug fixes related to imports
• Minor bug fixes related to SHASH/HBR
• Minor bug fix in normative.py (affecting SMSE)

PCNtoolkit version 0.24

Only minor changes (functionally virtually equivalent to version 0.23)

• Minor bug fix related to SHASH/HBR
• Added change log

PCNtoolkit version 0.23

Changes:

• SHASH functionality for HBR added
• Bug fix for normative model predict() function

PCNtoolkit version 0.22

Some minor updates and bug fixes:

• updates to documentation and tutorials
• updates to normative_parallel (interactive usage)
• updates to HBR (merge functionality)
• other minor bug fixes related to cross-validation (computation of error metrics), import problems and calibration statistics

PCNtoolkit version 0.21

Relatively minor updates with respect to version 0.20, including:

• documentation updates
• minor updates to warp (including bug fix for the compostition)
• software version is saved in models
• utility functions for calibration descriptives and extreme values