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1. nf-core/clipseq nf-core/clipseq Public

   CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

   Nextflow 20 27

2. ulelab/clipplotr ulelab/clipplotr Public

   A tool to facilitate comparative visualisation of CLIP data

   R 14 5

3. luslab/crispr-indels luslab/crispr-indels Public

   Python 3 4

4. ulelab/tdp43-mutants ulelab/tdp43-mutants Public

   Repository for "TDP-43 condensation properties specify its RNA binding and regulatory repertoire"

   Jupyter Notebook 2

5. tosca tosca Public

   Nextflow analysis pipeline for hiCLIP and proximity ligation sequencing data

   Nextflow 3 2

6. comp-hiclip comp-hiclip Public

   R