diff --git a/freyja/data/last_barcode_update.txt b/freyja/data/last_barcode_update.txt index 4c885de..6851396 100644 --- a/freyja/data/last_barcode_update.txt +++ b/freyja/data/last_barcode_update.txt @@ -1 +1 @@ -09_17_2024-01-50 +09_18_2024-01-49 diff --git a/freyja/data/lineage_mutations.json b/freyja/data/lineage_mutations.json index 122fcce..c32b6e2 100644 --- a/freyja/data/lineage_mutations.json +++ b/freyja/data/lineage_mutations.json @@ -62822,6 +62822,78 @@ "G28883C", "A29510C" ], + "BF.24": [ + "C241T", + "T670G", + "C1627T", + "G2177T", + "C2790T", + "C3037T", + "G4184A", + "C4321T", + "T6979G", + "C9344T", + "A9424G", + "C9534T", + "C9967T", + "C10029T", + "C10198T", + "G10447A", + "C10449A", + "G12160A", + "C12880T", + "C14408T", + "C15714T", + "C17410T", + "A18163G", + "C18570T", + "C19955T", + "A20055G", + "C21618T", + "T22200G", + "G22578A", + "C22674T", + "T22679C", + "C22686T", + "A22688G", + "G22775A", + "A22786C", + "G22813T", + "T22882G", + "T22917G", + "G22992A", + "C22995A", + "A23013C", + "T23018G", + "A23055G", + "A23063T", + "T23075C", + "A23403G", + "C23525T", + "T23599G", + "C23604A", + "C23854A", + "G23948T", + "A24424T", + "T24469A", + "G24620T", + "C25000T", + "C25584T", + "C26060T", + "C26270T", + "G26529A", + "C26577G", + "G26709A", + "A27038G", + "C27807T", + "C27889T", + "A28271T", + "C28311T", + "G28881A", + "G28882A", + "G28883C", + "A29510C" + ], "BF.36": [ "C241T", "T670G", @@ -142179,78 +142251,6 @@ "G28883C", "A29510C" ], - "BF.24": [ - "C241T", - "T670G", - "C1627T", - "G2177T", - "C2790T", - "C3037T", - "G4184A", - "C4321T", - "T6979G", - "C9344T", - "A9424G", - "C9534T", - "C9967T", - "C10029T", - "C10198T", - "G10447A", - "C10449A", - "G12160A", - "C12880T", - "C14408T", - "C15714T", - "C17410T", - "A18163G", - "C18570T", - "C19955T", - "A20055G", - "C21618T", - "T22200G", - "G22578A", - "C22674T", - "T22679C", - "C22686T", - "A22688G", - "G22775A", - "A22786C", - "G22813T", - "T22882G", - "T22917G", - "G22992A", - "C22995A", - "A23013C", - "T23018G", - "A23055G", - "A23063T", - "T23075C", - "A23403G", - "C23525T", - "T23599G", - "C23604A", - "C23854A", - "G23948T", - "A24424T", - "T24469A", - "G24620T", - "C25000T", - "C25584T", - "C26060T", - "C26270T", - "G26529A", - "C26577G", - "G26709A", - "A27038G", - "C27807T", - "C27889T", - "A28271T", - "C28311T", - "G28881A", - "G28882A", - "G28883C", - "A29510C" - ], "JQ.1": [ "C241T", "T670G", @@ -260254,7 +260254,7 @@ "A29510C", "A29558G" ], - "MC.9": [ + "MC.2.1": [ "C241T", "T670G", "C897A", @@ -260288,7 +260288,6 @@ "G15372T", "C15714T", "T15756A", - "G17122T", "G17334T", "C17410T", "A18163G", @@ -260307,6 +260306,7 @@ "A22034G", "T22200G", "C22208T", + "G22272A", "C22295A", "C22353A", "A22556G", @@ -260350,6 +260350,7 @@ "C23604G", "C23854A", "G23948T", + "G24095T", "C24378T", "A24424T", "T24469A", @@ -260358,7 +260359,6 @@ "C25000T", "C25207T", "C25584T", - "G25617T", "C26060T", "C26270T", "G26529C", @@ -260382,10 +260382,11 @@ "C28958A", "A29510C" ], - "MC.2.1": [ + "MC.6": [ "C241T", "T670G", "C897A", + "C2570T", "C2790T", "C3037T", "G3431T", @@ -260393,6 +260394,7 @@ "G4184A", "C4321T", "A6183G", + "G6536A", "C7113T", "A7842G", "C8293T", @@ -260434,7 +260436,6 @@ "A22034G", "T22200G", "C22208T", - "G22272A", "C22295A", "C22353A", "A22556G", @@ -260478,7 +260479,6 @@ "C23604G", "C23854A", "G23948T", - "G24095T", "C24378T", "A24424T", "T24469A", @@ -260510,11 +260510,10 @@ "C28958A", "A29510C" ], - "MC.6": [ + "MC.9": [ "C241T", "T670G", "C897A", - "C2570T", "C2790T", "C3037T", "G3431T", @@ -260522,7 +260521,6 @@ "G4184A", "C4321T", "A6183G", - "G6536A", "C7113T", "A7842G", "C8293T", @@ -260546,6 +260544,7 @@ "G15372T", "C15714T", "T15756A", + "G17122T", "G17334T", "C17410T", "A18163G", @@ -260615,6 +260614,7 @@ "C25000T", "C25207T", "C25584T", + "G25617T", "C26060T", "C26270T", "G26529C", @@ -262946,7 +262946,7 @@ "A29510C", "C29625T" ], - "MC.11.1": [ + "MC.13.1": [ "C241T", "T670G", "C897A", @@ -262968,6 +262968,7 @@ "C10198T", "G10447A", "C10449A", + "C10681T", "G11042T", "G11727A", "C12616T", @@ -262982,8 +262983,8 @@ "T15756A", "G17334T", "C17410T", - "C17430T", "A18163G", + "C18388T", "A18492G", "C18894T", "A19722G", @@ -263000,7 +263001,7 @@ "T22200G", "C22208T", "C22295A", - "C22329T", + "C22323T", "C22353A", "A22556G", "G22577C", @@ -263014,7 +263015,6 @@ "G22775A", "A22786C", "G22813T", - "C22858T", "T22882G", "G22895C", "T22896A", @@ -263075,7 +263075,7 @@ "C28958A", "A29510C" ], - "MC.13.1": [ + "MC.11.1": [ "C241T", "T670G", "C897A", @@ -263097,7 +263097,6 @@ "C10198T", "G10447A", "C10449A", - "C10681T", "G11042T", "G11727A", "C12616T", @@ -263112,8 +263111,8 @@ "T15756A", "G17334T", "C17410T", + "C17430T", "A18163G", - "C18388T", "A18492G", "C18894T", "A19722G", @@ -263130,7 +263129,7 @@ "T22200G", "C22208T", "C22295A", - "C22323T", + "C22329T", "C22353A", "A22556G", "G22577C", @@ -263144,6 +263143,7 @@ "G22775A", "A22786C", "G22813T", + "C22858T", "T22882G", "G22895C", "T22896A", diff --git a/freyja/data/usher_barcodes.feather b/freyja/data/usher_barcodes.feather index e446d99..6d79181 100644 Binary files a/freyja/data/usher_barcodes.feather and b/freyja/data/usher_barcodes.feather differ