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CHANGELOG.md

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  • version 1.3.0

    • fixed but with validating full entry containing compressed data files
    • remove term_id field from metadata. This id is no longer easy to find in the Synapse UI. Instead, use team_name field.
    • document that team_name field should have user name, if not submitting as a team.
  • version 1.2.0

    • added option to lrgasp-validate-entry to skip data validation and only check metadata for consistency
    • lrgasp-validate-expression-matrix takes optional models GTF as an option rather than a optional positional
  • version 1.1.0 2021-08-16

    • Renamed kitchen_sink data category to freestyle.
    • Clarified definition of entry to be consistent with the intended organization of the challenges. Multiple entries using different data categories may be submitted to a given challenge.
    • Add samples, library_prep, and platforms to entry.json and experiment.json to make them explicit rather than implicit from the files used.
  • version 1.0.0 2021-08-09

    • Add commands and instructions for submitting to synapse.