| Source | Datatype | # runs | Link | Comments | Known Issues |
|---|---|---|---|---|---|
| ENCODE | Illumina | 2 | FASTQ Rep 1, Read 1, FASTQ Rep 1, Read 2, FASTQ Rep 2, Read 1, FASTQ Rep 2, Read 2 | Paired-end 101bp, ENCODE Experiment ID: ENCSR000AEH | |
| ENCODE, processed by the ENCODE pipeline | PacBio | 2 | FASTQ Rep 1, Subreads BAM Rep 1, FLNC BAM Rep 1, FASTQ Rep 2, Subreads BAM Rep 2, FLNC BAM Rep 2 | Sequel2, ENCODE Experiment ID: ENCSR838WFC | |
| Nanopore RNA consortium, Workman et al. 2019 | Native RNA | 30 | FASTQ, Summary File (gzip), Multi_FAST5 | rel2 [Update January 2020] Basecalls (Guppy 3.2.6) | Duplicate reads exist |
| Nanopore RNA consortium, Workman et al. 2019 | cDNA | 12 | FASTQ, Summary File (gzip), Multi_FAST5 | rel2 [Update January 2020] Basecalls (Guppy 3.2.6) | Low mappability, contains uracil bases, dupicate reads exist |