AnnData spatial analysis 1 #1112
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@alex-l-kong @srivarra Can you guys just take a preliminary look? I'll do a second pass when the notebook tests are running. |
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What is the purpose of this PR?
Closes #1105.
How did you implement your changes
Assume that the user will use the AnnData conversion notebook once they have their completed cell table, and use this input for our spatial analyses computations.
Functions that were changed to take only
anndata_diras input, rather than the cell table and distance matrix directory path:Notebook updates:
Remaining issues