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numba parallelization fault with relabel_segmentation #1137

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alex-l-kong opened this issue Apr 23, 2024 · 0 comments
Open

numba parallelization fault with relabel_segmentation #1137

alex-l-kong opened this issue Apr 23, 2024 · 0 comments
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@alex-l-kong
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Describe the bug

When running functions that depend on relabel_segmentation (ex. the mask generation functions), the process will error out with an OMP error. This seems directly related to numba since it's the parallelization driver of this function and almost certainly relies on OpenMP to facilitate this.

@jranek confirmed that converting this function into a non-numba-based routine fixed it.

Expected behavior

There should be no error.

To Reproduce

Screenshot 2024-04-19 at 9 15 09 AM

@alex-l-kong alex-l-kong added the bug Something isn't working label Apr 23, 2024
@alex-l-kong alex-l-kong changed the title numba segmentation fault with relabel_segmentation numba parallelization fault with relabel_segmentation Apr 23, 2024
@srivarra srivarra added this to the v0.8.0 Release milestone Oct 3, 2024
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