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QC TMA feature specification #438

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camisowers opened this issue Oct 10, 2023 · 0 comments
Open

QC TMA feature specification #438

camisowers opened this issue Oct 10, 2023 · 0 comments
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bug Something isn't working

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@camisowers
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Please refer to our FAQ and look at our known issues before opening a bug report.

Describe the bug
The user specified qc_metrics argument in the QC tma notebook doesn't do anything.
Currently if you just set qc_metrics = ["Non-zero mean intensity"], output files are also still generated for the nonzero_mean and 99.9% percentile.

Expected behavior
The notebook should only generate stat files for the listed metrics.

To Reproduce
Run the notebook set for a single qc metric.

@camisowers camisowers added the bug Something isn't working label Oct 10, 2023
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