Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Mass proficient extraction for NAS storage #342

Merged
merged 44 commits into from
Aug 22, 2023
Merged

Mass proficient extraction for NAS storage #342

merged 44 commits into from
Aug 22, 2023

Commits on Apr 6, 2023

  1. Initial commit of mass proficient extraction

    @alex-l-kong
    alex-l-kong committed Apr 6, 2023
    Configuration menu
    Copy the full SHA
    4690d25 View commit details
    Browse the repository at this point in the history

Commits on Apr 10, 2023

  1. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Apr 10, 2023
    Configuration menu
    Copy the full SHA
    b6f7807 View commit details
    Browse the repository at this point in the history

Commits on Apr 12, 2023

  1. Add mass proficient MPH extraction

    @alex-l-kong
    alex-l-kong committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    f9e7bb2 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'prof_extract' of https://github.com/angelolab/toffy int… 

    …o prof_extract
    @alex-l-kong
    alex-l-kong committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    7ed4c08 View commit details
    Browse the repository at this point in the history

  3. Ensure bin_extraction also handles proficient metrics extraction

    @alex-l-kong
    alex-l-kong committed Apr 12, 2023
    Configuration menu
    Copy the full SHA
    203b04e View commit details
    Browse the repository at this point in the history

Commits on Apr 13, 2023

  1. Handle mass proficient and deficient bin file extraction separately (… 

    …in case missing FOVs different for both)
    @alex-l-kong
    alex-l-kong committed Apr 13, 2023
    Configuration menu
    Copy the full SHA
    8f45246 View commit details
    Browse the repository at this point in the history

  2. Add mass proficient MPH normalization generation to 4b notebook

    @alex-l-kong
    alex-l-kong committed Apr 13, 2023
    Configuration menu
    Copy the full SHA
    72159df View commit details
    Browse the repository at this point in the history

  3. OCD comment change

    @alex-l-kong
    alex-l-kong committed Apr 13, 2023
    Configuration menu
    Copy the full SHA
    cdde418 View commit details
    Browse the repository at this point in the history

  4. Ensure mass proficient panel passed to proficient extraction in 3b no… 

    …tebook
    @alex-l-kong
    alex-l-kong committed Apr 13, 2023
    Configuration menu
    Copy the full SHA
    099a317 View commit details
    Browse the repository at this point in the history

  5. Typo fix

    @alex-l-kong
    alex-l-kong committed Apr 13, 2023
    Configuration menu
    Copy the full SHA
    5318005 View commit details
    Browse the repository at this point in the history

Commits on Apr 14, 2023

  1. Ensure mass proficient directory actually gets created prior to extra… 

    …ction in notebook 3b
    @alex-l-kong
    alex-l-kong committed Apr 14, 2023
    Configuration menu
    Copy the full SHA
    106cfe6 View commit details
    Browse the repository at this point in the history

  2. Make comment about mass proficient extraction more clear

    @alex-l-kong
    alex-l-kong committed Apr 14, 2023
    Configuration menu
    Copy the full SHA
    00b9439 View commit details
    Browse the repository at this point in the history

  3. Ensure pulse height generation doesn't attempt to read in proficient … 

    …metric data
    @alex-l-kong
    alex-l-kong committed Apr 14, 2023
    Configuration menu
    Copy the full SHA
    7acdee2 View commit details
    Browse the repository at this point in the history

  4. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Apr 14, 2023
    Configuration menu
    Copy the full SHA
    91cb986 View commit details
    Browse the repository at this point in the history

Commits on Apr 17, 2023

  1. Remove duplicate intermediate callback

    @alex-l-kong
    alex-l-kong committed Apr 17, 2023
    Configuration menu
    Copy the full SHA
    865fda7 View commit details
    Browse the repository at this point in the history

  2. Typo in FOV callbacks

    @alex-l-kong
    alex-l-kong committed Apr 17, 2023
    Configuration menu
    Copy the full SHA
    c2dd4df View commit details
    Browse the repository at this point in the history

Commits on Apr 19, 2023

  1. Add flag to control proficient extraction or not

    @alex-l-kong
    alex-l-kong committed Apr 19, 2023
    Configuration menu
    Copy the full SHA
    8f02717 View commit details
    Browse the repository at this point in the history

  2. Nuke proficient MPH extraction

    @alex-l-kong
    alex-l-kong committed Apr 19, 2023
    Configuration menu
    Copy the full SHA
    58b5b9c View commit details
    Browse the repository at this point in the history

Commits on May 15, 2023

  1. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored May 15, 2023
    Configuration menu
    Copy the full SHA
    10d8fd1 View commit details
    Browse the repository at this point in the history

Commits on Jun 28, 2023

  1. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Jun 28, 2023
    Configuration menu
    Copy the full SHA
    20deb14 View commit details
    Browse the repository at this point in the history

Commits on Jun 30, 2023

  1. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Jun 30, 2023
    Configuration menu
    Copy the full SHA
    0f63526 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Jun 30, 2023
    Configuration menu
    Copy the full SHA
    800a87c View commit details
    Browse the repository at this point in the history

Commits on Jul 3, 2023

  1. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Jul 3, 2023
    Configuration menu
    Copy the full SHA
    e4d332a View commit details
    Browse the repository at this point in the history

Commits on Jul 4, 2023

  1. Timing tests for normalization

    @alex-l-kong
    alex-l-kong committed Jul 4, 2023
    Configuration menu
    Copy the full SHA
    08fbd94 View commit details
    Browse the repository at this point in the history

Commits on Jul 14, 2023

  1. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Jul 14, 2023
    Configuration menu
    Copy the full SHA
    8219600 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'prof_extract' of https://github.com/angelolab/toffy int… 

    …o prof_extract
    @alex-l-kong
    alex-l-kong committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    5477369 View commit details
    Browse the repository at this point in the history

  3. Update pyproject.toml dependencies to be compatible with mibi-bin-too… 

    …ls and alpineer
    @alex-l-kong
    alex-l-kong committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    d8615a4 View commit details
    Browse the repository at this point in the history

  4. Standardize the deficient and proficient ranges based on agreed upon … 

    …range values
    @alex-l-kong
    alex-l-kong committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    0666c2d View commit details
    Browse the repository at this point in the history

  5. Delete timeit print statements for MPH

    @alex-l-kong
    alex-l-kong committed Jul 14, 2023
    Configuration menu
    Copy the full SHA
    a53f981 View commit details
    Browse the repository at this point in the history

  6. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Jul 14, 2023
    Configuration menu
    Copy the full SHA
    0d475c0 View commit details
    Browse the repository at this point in the history

Commits on Jul 17, 2023

  1. Begin reducing test cases

    @alex-l-kong
    alex-l-kong committed Jul 17, 2023
    Configuration menu
    Copy the full SHA
    4c54cf0 View commit details
    Browse the repository at this point in the history

  2. Merge remote-tracking branch 'origin/prof_extract' into prof_extract

    @alex-l-kong
    alex-l-kong committed Jul 17, 2023
    Configuration menu
    Copy the full SHA
    0ecec00 View commit details
    Browse the repository at this point in the history

Commits on Jul 24, 2023

  1. Document the start and stop offset params

    @alex-l-kong
    alex-l-kong committed Jul 24, 2023
    Configuration menu
    Copy the full SHA
    b24f2b7 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Jul 24, 2023
    Configuration menu
    Copy the full SHA
    5128dcf View commit details
    Browse the repository at this point in the history

  3. Update poetry lock file to ensure this actually installs

    @alex-l-kong
    alex-l-kong committed Jul 24, 2023
    Configuration menu
    Copy the full SHA
    62327f7 View commit details
    Browse the repository at this point in the history

Commits on Jul 26, 2023

  1. Clarify comment about extraction ranges

    @alex-l-kong
    alex-l-kong committed Jul 26, 2023
    Configuration menu
    Copy the full SHA
    4a95055 View commit details
    Browse the repository at this point in the history

  2. Fix another extraction window comment

    @alex-l-kong
    alex-l-kong committed Jul 26, 2023
    Configuration menu
    Copy the full SHA
    26a2f8a View commit details
    Browse the repository at this point in the history

Commits on Aug 4, 2023

  1. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Aug 4, 2023
    Configuration menu
    Copy the full SHA
    c54f40b View commit details
    Browse the repository at this point in the history

Commits on Aug 15, 2023

  1. Make sure extract_prof is included as a param to watcher tests

    @alex-l-kong
    alex-l-kong committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    156f79f View commit details
    Browse the repository at this point in the history

  2. Merge branch 'main' into prof_extract

    @alex-l-kong
    alex-l-kong authored Aug 15, 2023
    Configuration menu
    Copy the full SHA
    4fbc76b View commit details
    Browse the repository at this point in the history

  3. Add extract_prof param to inter_callback test

    @alex-l-kong
    alex-l-kong committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    e6f70cb View commit details
    Browse the repository at this point in the history

  4. Revert back to old deficient and proficient extraction ranges

    @alex-l-kong
    alex-l-kong committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    91c7d9e View commit details
    Browse the repository at this point in the history

Commits on Aug 21, 2023

  1. Pulse heights are not extracted for deficient and proficient data any… 

    …more
    @alex-l-kong
    alex-l-kong committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    496566e View commit details
    Browse the repository at this point in the history

  2. Clarify comment

    @alex-l-kong
    alex-l-kong committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    56d18cb View commit details
    Browse the repository at this point in the history