New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

User-provided file path for reference database/classifier #126

Open

lukenoaa opened this issue Apr 26, 2024 · 1 comment

Member

lukenoaa commented Apr 26, 2024

Change from refseqs.qza/reftax.qza or classifier.qza to a user-provided file path (alt: Opal provides file path on server)

See how Opal handles this here:
https://github.com/Geo-omics/GLAMR_omics_pipelines/blob/adc9f8ca09c68e1b7948669a5163fa40fb873551/Snakefile#L319

@ksilnoaa @CarterRoll @baydenwillms

Collaborator

ksilnoaa commented Sep 13, 2024

This has been implemented in Tourmaline V2. I'll close this issue once we migrate to that version.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment