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1. bcftools bcftools Public

   Forked from samtools/bcftools

   This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

   C

2. Duplex-Sequencing Duplex-Sequencing Public

   Forked from Kennedy-Lab-UW/Duplex-Sequencing

   Python

3. DWGSIM DWGSIM Public

   Forked from nh13/DWGSIM

   Whole Genome Simulator for Next-Generation Sequencing

   C

4. deepTools deepTools Public

   Forked from deeptools/deepTools

   Tools to process and analyze deep sequencing data.

   Python

5. VEP_plugins VEP_plugins Public

   Forked from Ensembl/VEP_plugins

   Plugins for the Ensembl Variant Effect Predictor (VEP)

   Perl

6. vcf2maf vcf2maf Public

   Forked from mskcc/vcf2maf

   Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

   Perl