Set minimum pyrodigal-gv version to 0.3.1

apcamargo · Nov 30, 2023 · 03e3a22 · 03e3a22
1 parent db2ef2e
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -6,16 +6,18 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
+### Fixed
+- Set minimum `pyrodigal-gv` version to `0.3.1`. This fixes a bug introduced in `0.3.0` that led to the identification of RBS motifs not reported by Prodigal.
+
 ### Changed
 - Remove the `CCGGGG` RBS motif from the list of motifs.
 
-
 ## [1.7.2] - 2023-11-28
 ### Fixed
 - Add the `CCGGGG` RBS motif to the list of motifs.
 
 ### Changed
-- Do not include stop codon (`*`) at the protein end of sequences.
+- Do not include stop codon (`*`) at the end of protein sequences.
 - Set minimum `pyrodigal-gv` version to `0.2.0`.
 
 ## [1.7.1] - 2023-10-26

diff --git a/pyproject.toml b/pyproject.toml
@@ -14,7 +14,7 @@ dependencies = [
     "keras",
     "numba >=0.57",
     "numpy >=1.21",
-    "pyrodigal-gv >=0.2",
+    "pyrodigal-gv >=0.3.1",
     "python-crfsuite",
     "rich-click",
     "taxopy",