From 03e3a225959ae0f84f329c46c45cce2a9989f954 Mon Sep 17 00:00:00 2001 From: Antonio Camargo Date: Thu, 30 Nov 2023 08:21:08 -0300 Subject: [PATCH] Set minimum `pyrodigal-gv` version to `0.3.1` --- CHANGELOG.md | 6 ++++-- pyproject.toml | 2 +- 2 files changed, 5 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 5ead6ee..bcef6e4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,16 +6,18 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] +### Fixed +- Set minimum `pyrodigal-gv` version to `0.3.1`. This fixes a bug introduced in `0.3.0` that led to the identification of RBS motifs not reported by Prodigal. + ### Changed - Remove the `CCGGGG` RBS motif from the list of motifs. - ## [1.7.2] - 2023-11-28 ### Fixed - Add the `CCGGGG` RBS motif to the list of motifs. ### Changed -- Do not include stop codon (`*`) at the protein end of sequences. +- Do not include stop codon (`*`) at the end of protein sequences. - Set minimum `pyrodigal-gv` version to `0.2.0`. ## [1.7.1] - 2023-10-26 diff --git a/pyproject.toml b/pyproject.toml index 9ce02a7..3380fe4 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -14,7 +14,7 @@ dependencies = [ "keras", "numba >=0.57", "numpy >=1.21", - "pyrodigal-gv >=0.2", + "pyrodigal-gv >=0.3.1", "python-crfsuite", "rich-click", "taxopy",