From 53b9ea619e6715285650e437df0f44f0e78a482e Mon Sep 17 00:00:00 2001 From: svittoz Date: Tue, 12 Mar 2024 13:50:59 +0000 Subject: [PATCH] small modif --- docs/functionalities/biology/quick-use.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/docs/functionalities/biology/quick-use.md b/docs/functionalities/biology/quick-use.md index e9c4da6e..c3342164 100644 --- a/docs/functionalities/biology/quick-use.md +++ b/docs/functionalities/biology/quick-use.md @@ -17,16 +17,16 @@ from eds_scikit.biology import prepare_measurement_table, ConceptsSet custom_leukocytes = ConceptsSet("Custom_Leukocytes") custom_leukocytes.add_concept_codes( - concept_codes=["A0174", "H6740"], terminology="GLIMS_ANABIO" -) # (1) + concept_codes=["A0174", "H6740"], terminology="GLIMS_ANABIO" # (1) +) custom_leukocytes.add_concept_codes( - concept_codes=["6690-2"], terminology="ITM_LOINC" -) # (2) + concept_codes=["6690-2"], terminology="ITM_LOINC" # (2) +) ``` -1. Codes must be given with terminology. See. [measurement_config](/reference/io/settings/) for details on terminologies relationship. -2. Codes must be given with terminology. See. [measurement_config](/reference/io/settings/) for details on terminologies relationship. +1. Codes must be given with terminology. Available terminologies can be accessed with ```python eds_scikit.io.settings.measurement_config['source_terminologies']```. See. [AP-HP biology](https://id-pages.eds.aphp.fr/pfm/bigdata/eds-central-database/latest/vocabularies_concepts/biology/) for details on the AP-HP setting. +2. Codes must be given with terminology. Available terminologies can be accessed with ```python eds_scikit.io.settings.measurement_config['source_terminologies']```. See. [AP-HP biology](https://id-pages.eds.aphp.fr/pfm/bigdata/eds-central-database/latest/vocabularies_concepts/biology/) for details on the AP-HP setting. ### Preparing measurement table